Journal Papers
Pending
C. Cali, T.K. Berger, M. Pignatelli, A. Carleton, H. Markram and M. Giugliano, Inferring connection proximity in networks of electrically coupled cells by subthreshold frequency response analysis, J Comput Neurosci, 2008, 24, 330-45. To appear. [ detailed record ]
2012
S. Lasserre, J. Hernando, S. Hill, F. Schuermann, P. de Miguel Anasagasti, G. Abou Jaoude and H. Markram, A Neuron Membrane Mesh Representation for Visualization of Electrophysiological Simulations, Ieee Transactions On Visualization And Computer Graphics, 2012, 18, 214-227. [ detailed record ]
2011
C.A. Anastassiou, R. Perin, H. Markram and C. Koch, Ephaptic coupling of cortical neurons, Nature Neuroscience, 2011, 14, 217-U304. [ detailed record ]
R. Perin, T.K. Berger and H. Markram, A synaptic organizing principle for cortical neuronal groups, Proceedings Of The National Academy Of Sciences Of The United States Of America, 2011, 108, 5419-5424. [ detailed record ]
H. Markram and R. Perin, Innate neural assemblies for Lego memory, Frontiers In Neural Circuits, 2011, 5, -. [ detailed record ]
E. Hay, S. Hill, F. Schuermann, H. Markram and I. Segev, Models of Neocortical Layer 5b Pyramidal Cells Capturing a Wide Range of Dendritic and Perisomatic Active Properties, Plos Computational Biology, 2011, 7, -. [ detailed record ]
S. Druckmann, T.K. Berger, F. Schuermann, S. Hill, H. Markram and I. Segev, Effective Stimuli for Constructing Reliable Neuron Models, Plos Computational Biology, 2011, 7, -. [ detailed record ]
G. Miller and H. Markram, NEWSMAKER INTERVIEW: HENRY MARKRAM Blue Brain Founder Responds To Critics, Clarifies His Goals, Science, 2011, 334, 748-749. [ detailed record ]
H. Markram, W. Gerstner and P.J. Sjöström, A history of spike-timing-dependent plasticity, Frontiers in Synaptic Neuroscience, 2011, 3, 1-24. [ detailed record ] [ full document ]
2010
T.K. Berger, G. Silberberg, R. Perin and H. Markram, Brief Bursts Self-Inhibit and Correlate the Pyramidal Network, Plos Biology, 2010, 8, -. [ detailed record ]
K. Markram and H. Markram, The Intense World Theory - a unifying theory of the neurobiology of autism, Frontiers In Human Neuroscience, 2010, 4, -. [ detailed record ]
L. Gambazzi, O. Gokce, T. Seredenina, E. Katsyuba, H. Runne, H. Markram, M. Giugliano and R. Luthi-Carter, Diminished activity-dependent brain-derived neurotrophic factor expression underlies cortical neuron microcircuit hypoconnectivity resulting from exposure to mutant huntingtin fragments, The Journal of pharmacology and experimental therapeutics, 2010, 335, 13-22. [ detailed record ]
2009
G. Cellot, E. Cilia, S. Cipollone, V. Rancic, A. Sucapane, S. Giordani, L. Gambazzi, H. Markram, M. Grandolfo, D. Scaini, F. Gelain, L. Casalis, M. Prato, M. Giugliano and L. Ballerini, Carbon nanotubes might improve neuronal performance by favouring electrical shortcuts, Nature Nanotechnology, 2009, 4, 126-133. [ detailed record ]
T.K. Berger, R. Perin, G. Silberberg and H. Markram, Frequency-dependent disynaptic inhibition in the pyramidal network: a ubiquitous pathway in the developing rat neocortex, Journal Of Physiology-London, 2009, 587, 5411-5425. [ detailed record ]
A. Loebel, G. Silberberg, D. Helbig, H. Markram, M. Tsodyks and M.J.E. Richardson, Multiquantal release underlies the distribution of synaptic efficacies in the neocortex, Frontiers In Computational Neuroscience, 2009, 3, -. [ detailed record ]
S. Gawad, M. Giugliano, M.O. Heuschkel, B. Wessling, H. Markram, V. Schnakenberg, P. Renaud and H. Morgan, Substrate arrays of iridium oxide microelectrodes for in-vitro neuronal interfacing, Frontiers in Neuroengineering, 2009, 2, 1.1-1.7. [ detailed record ] [ full document ]
2008
H. Markram, Fixing the location and dimensions of functional neocortical columns, Hfsp Journal, 2008, 2, 132-135. [ detailed record ]
O. Melamed, O. Barak, G. Silberberg, H. Markram and M. Tsodyks, Slow oscillations in neural networks with facilitating synapses, Journal Of Computational Neuroscience, 2008, 25, 308-316. [ detailed record ]
M.L. Hines, H. Markram and F. Schuermann, Fully implicit parallel simulation of single neurons, Journal Of Computational Neuroscience, 2008, 25, 439-448. [ detailed record ]
M. Pospischil, M. Toledo-Rodriguez, C. Monier, Z. Piwkowska, T. Bal, Y. Fregnac, H. Markram and A. Destexhe, Minimal Hodgkin-Huxley type models for different classes of cortical and thalamic neurons, Biological Cybernetics, 2008, 99, 427-441. [ detailed record ]
S. Druckmann, T.K. Berger, S. Hill, F. Schuermann, H. Markram and I. Segev, Evaluating automated parameter constraining procedures of neuron models by experimental and surrogate data, Biological Cybernetics, 2008, 99, 371-379. [ detailed record ]
T. Rinaldi, C. Perrodin and H. Markram, Hyper-connectivity and hyper-plasticity in the medial prefrontal cortex in the valproic acid animal model of autism, Frontiers In Neural Circuits, 2008, 2, -. [ detailed record ]
T. Rinaldi, G. Silberberg and H. Markram, Hyperconnectivity of Local Neocortical Microcircuitry Induced by Prenatal Exposure to Valproic Acid, Cereb Cortex, 2008, 18, 763-70. [ detailed record ]
K. Markram, T. Rinaldi, D.L. Mendola, C. Sandi and H. Markram, Abnormal fear conditioning and amygdala processing in an animal model of autism, Neuropsychopharmacology, 2008, 33, 901-12. [ detailed record ] [ full document ]
J. Kozloski, K. Sfyrakis, S. Hill, F. Schürmann, C. Peck and H. Markram, Identifying, tabulating, and analyzing contacts between branched neuron morphologies, IBM Journal of Research and Development, 2008, 52, 43-55. [ detailed record ]
2007
G. Silberberg and H. Markram, Disynaptic inhibition between neocortical pyramidal cells mediated by Martinotti cells, Neuron, 2007, 53, 735-46. [ detailed record ]
T. Rinaldi, K. Kulangara, K. Antoniello and H. Markram, Elevated NMDA receptor levels and enhanced postsynaptic long-term potentiation induced by prenatal exposure to valproic acid, Proc Natl Acad Sci U S A, 2007, 104, 13501-6. [ detailed record ]
A. Mazzatenta, M. Giugliano, S. Campidelli, L. Gambazzi, L. Businaro, H. Markram, M. Prato and L. Ballerini, Interfacing neurons with carbon nanotubes: electrical signal transfer and synaptic stimulation in cultured brain circuits, J Neurosci, 2007, 27, 6931-6936. [ detailed record ]
H. Markram, T. Rinaldi and K. Markram, The intense world syndrome – an alternative hypothesis for autism, Front. Neurosci., 2007, 1, 77-96. [ detailed record ]
H. Markram, Bioinformatics: industrializing neuroscience, Nature, 2007, 445, 160-1. [ detailed record ]
J.V. Le Be, G. Silberberg, Y. Wang and H. Markram, Morphological, electrophysiological, and synaptic properties of corticocallosal pyramidal cells in the neonatal rat neocortex, Cereb Cortex, 2007, 17, 2204-13. [ detailed record ]
S. Druckmann, Y. Banitt, A. Gidon, F. Schürmann, H. Markram and I. Segev, A novel multiple objective optimization framework for constraining conductance-based neuron models by experimental data, Front. Neurosci., 2007, 1, 7-18. [ detailed record ]
2006
Y. Wang, H. Markram, P.H. Goodman, T.K. Berger, J. Ma and P.S. Goldman-Rakic, Heterogeneity in the pyramidal network of the medial prefrontal cortex, Nat Neurosci, 2006, 9, 534-42. [ detailed record ]
M. Migliore, C. Cannia, W.W. Lytton, H. Markram and M.L. Hines, Parallel network simulations with NEURON, J Comput Neurosci, 2006, 21, 119-29. [ detailed record ]
J.V. Le Be and H. Markram, Spontaneous and evoked synaptic rewiring in the neonatal neocortex, Proc Natl Acad Sci U S A, 2006, 103, 13214-9. [ detailed record ]
J.V. Le Be and H. Markram, [A new mechanism for memory: neuronal networks rewiring in the young rat neocortex], Med Sci (Paris), 2006, 22, 1031-3. [ detailed record ]
2005
M. Toledo-Rodriguez, P. Goodman, M. Illic, C. Wu and H. Markram, Neuropeptide and calcium-binding protein gene expression profiles predict neuronal anatomical type in the juvenile rat, J Physiol, 2005, 567, 401-13. [ detailed record ]
A.J. Muhammad and H. Markram, NEOBASE: databasing the neocortical microcircuit, Stud Health Technol Inform, 2005, 112, 167-77. [ detailed record ]
N. Kalisman, G. Silberberg and H. Markram, The neocortical microcircuit as a tabula rasa, Proc Natl Acad Sci U S A, 2005, 102, 880-5. [ detailed record ]
O. Melamed, G. Silberberg, H. Markram, W. Gerstner and M.J.E. Richardson, Subthreshold cross-correlations between cortical neurons: A reference model with static synapses, NEUROCOMPUTING, 2005, 685-690. [ detailed record ] [ full document ]
M.J.E. Richardson, O. Melamed, G. Silberberg, W. Gerstner and H. Markram, Short-term-plasticity orchestrates the response of pyramidal cells and interneurons to population bursts, J. Computational Neuroscience, 2005, 18, 323-331. [ detailed record ] [ full document ]
2004
Y. Wang, M. Toledo-Rodriguez, A. Gupta, C. Wu, G. Silberberg, J. Luo and H. Markram, Anatomical, physiological and molecular properties of Martinotti cells in the somatosensory cortex of the juvenile rat, J Physiol, 2004, 561, 65-90. [ detailed record ]
M. Toledo-Rodriguez, B. Blumenfeld, C. Wu, J. Luo, B. Attali, P. Goodman and H. Markram, Correlation maps allow neuronal electrical properties to be predicted from single-cell gene expression profiles in rat neocortex, Cereb Cortex, 2004, 14, 1310-27. [ detailed record ]
G. Silberberg, C. Wu and H. Markram, Synaptic dynamics control the timing of neuronal excitation in the activated neocortical microcircuit, J Physiol, 2004, 556, 19-27. [ detailed record ]
G. Silberberg, M. Bethge, H. Markram, K. Pawelzik and M. Tsodyks, Dynamics of population rate codes in ensembles of neocortical neurons, Journal of Neurophysiology, 2004, 91, 704-709. [ detailed record ]
W. Maass, T. Natschlager and H. Markram, Fading memory and kernel properties of generic cortical microcircuit models, J Physiol Paris, 2004, 98, 315-30. [ detailed record ]
O. Melamed, W. Gerstner, W. Maass, M. Tsodyks and H. Markram, Coding and Learning of behavioral sequences, Trends in Neurosciences, 2004, 27, 11-14. [ detailed record ] [ full document ]
2003
J.F. Linden and H. Markram, Preface to the Special Issue, Cerebral Cortex, 2003, 13, 1. [ detailed record ]
N. Kalisman, G. Silberberg and H. Markram, Deriving physical connectivity from neuronal morphology, Biol Cybern, 2003, 88, 210-8. [ detailed record ]
S. Häusler, H. Markram and W. Maass, Perspectives of the high-dimensional dynamics of neural microcircuits from the point of view of low-dimensional readouts, Complexity, 2003, 8, 39 - 50. [ detailed record ]
2002
Y. Wang, A. Gupta, M. Toledo-Rodriguez, C.Z. Wu and H. Markram, Anatomical, physiological, molecular and circuit properties of nest basket cells in the developing somatosensory cortex, Cereb Cortex, 2002, 12, 395-410. [ detailed record ]
T. Natschläger, W. Maass and H. Markram, The "Liquid Computer": A Novel Strategy for Real-Time Computing on Time Series, Special Issue on Foundations of Information Processing of TELEMATIK , 2002, 8, 39-43. [ detailed record ]
W. Maass, T. Natschlager and H. Markram, Real-time computing without stable states: a new framework for neural computation based on perturbations, Neural Comput, 2002, 14, 2531-60. [ detailed record ]
W. Maass and H. Markram, Synapses as dynamic memory buffers, Neural Networks, 2002, 15, 155-161. [ detailed record ]
G. Fuhrmann, I. Segev, H. Markram and M. Tsodyks, Coding of temporal information by activity-dependent synapses, J Neurophysiol, 2002, 87, 140-8. [ detailed record ]
G. Fuhrmann, H. Markram and M. Tsodyks, Spike frequency adaptation and neocortical rhythms, Journal of Neurophysiology, 2002, 88, 761-770. [ detailed record ]
1997
W. Gerstner, A.K. Kreiter, H. Markram and A.V.M. Herz, Neural codes: firing rates and beyond, Proc. Natl. Acad. Sci. USA, 1997, 94, 12740-12741. [ detailed record ]
Conference Papers
2006
L. Righetti, J. Buchli, A.J. Ijspeert, A.J. Ijspeert, J. Buchli, A. Selverston, M. Rabinovich, M. Hasler, W. Gerstner, A. Billard, H. Markram and D.F. (Editors), Programmable Central Pattern Generators, Dynamical principles for neuroscience and intelligent biomimetic devices, 2006, 129-130. [ detailed record ]
2003
W. Maass, T. Natschläger, H. Markram, S. Becker, S. Thrun and K. Obermayer, A Model for Real-Time Computation in Generic Neural Microcircuits, 2003. [ detailed record ]
2002
W. Maass, R.A. Legenstein, H. Markram, H.H. Buelthoff, S.W. Lee, T.A. Poggio and C. Wallraven, A New Approach towards Vision Suggested by Biologically Realistic Neural Microcircuit Models, Biologically Motivated Computer Vision, 2002, 282-293. [ detailed record ]
Reviews
2008
G.A. Ascoli, L. Alonso-Nanclares, S.A. Anderson, G. Barrionuevo, R. Benavides-Piccione, A. Burkhalter, G. Buzsáki, B. Cauli, J. Defelipe, A. Fairén, D. Feldmeyer, G. Fishell, Y. Fregnac, T.F. Freund, D. Gardner, E.P. Gardner, J.H. Goldberg, M. Helmstaedter, S. Hestrin, F. Karube, Z.F. Kisvárday, B. Lambolez, D.A. Lewis, O. Marin, H. Markram, A. Muñoz, A. Packer, C.C.H. Petersen, K.S. Rockland, J. Rossier, B. Rudy, P. Somogyi, J.F. Staiger, G. Tamas, A.M. Thomson, M. Toledo-Rodriguez, Y. Wang, D.C. West and R. Yuste, Petilla terminology: nomenclature of features of GABAergic interneurons of the cerebral cortex, Nature reviews. Neuroscience, 2008, 9, 557-68. [ detailed record ]
2006
H. Markram, The blue brain project, Nat Rev Neurosci, 2006, 7, 153-60. [ detailed record ]
2005
G. Silberberg, S. Grillner, F.E. LeBeau, R. Maex and H. Markram, Synaptic pathways in neural microcircuits, Trends Neurosci, 2005, 28, 541-51. [ detailed record ]
S. Grillner, H. Markram, E. De Schutter, G. Silberberg and F.E. LeBeau, Microcircuits in action--from CPGs to neocortex, Trends Neurosci, 2005, 28, 525-33. [ detailed record ]
2004
H. Monyer and H. Markram, Interneuron Diversity series: Molecular and genetic tools to study GABAergic interneuron diversity and function, Trends Neurosci, 2004, 27, 90-7. [ detailed record ]
H. Markram, M. Toledo-Rodriguez, Y. Wang, A. Gupta, G. Silberberg and C. Wu, Interneurons of the neocortical inhibitory system, Nat Rev Neurosci, 2004, 5, 793-807. [ detailed record ]
2003
R. Legenstein, H. Markram and W. Maass, Input prediction and autonomous movement analysis in recurrent circuits of spiking neurons, Rev Neurosci, 2003, 14, 5-19. [ detailed record ]
2002
G. Silberberg, A. Gupta and H. Markram, Stereotypy in neocortical microcircuits, Trends Neurosci, 2002, 25, 227-30. [ detailed record ]
Ph.D. Theses
2011
S. Ramaswamy, H. Markram and S.L. Hill, Emergent Properties of in silico Synaptic Transmission in a Model of the Rat Neocortical Column, Ph.D. Thesis, 2011. [ detailed record ] [ full document ]
R. Ranjan and H. Markram, Engineering Neuron Models, Ph.D. Thesis, 2011. [ detailed record ]
G. Khazen and H. Markram, Predictive Engineering the Membrane Composition of Neocortical Neurons, Ph.D. Thesis, 2011. [ detailed record ] [ full document ]
M.A. Jan, H. Markram and F. Schürmann, A Pipeline Based Approach for Experimental Neuroscience Data Management, Ph.D. Thesis, 2011. [ detailed record ]
2010
L. Gambazzi and H. Markram, Impact of Carbon-Nanotube Substrate Coating in Neuronal Networks, Ph.D. Thesis, 2010. [ detailed record ] [ full document ]
R.d.C. Perin and H. Markram, Emergent Dynamics in Neocortical Microcircuits, Ph.D. Thesis, 2010. [ detailed record ] [ full document ]
I. Riachi and H. Markram, Emergent Connectivity Principles in the Neocortex, Ph.D. Thesis, 2010. [ detailed record ] [ full document ]
2009
T. Berger and H. Markram, Properties of neocortical microcircuits, Ph.D. Thesis, 2009. [ detailed record ] [ full document ]
M. Pignatelli, H. Markram and A. Carleton, Structure and function of the olfactory bulb microcircuit, Ph.D. Thesis, 2009. [ detailed record ] [ full document ]
2007
J.-V. Le Bé and H. Markram, Structure and dynamics of the neocortical microcircuit connectivity, Ph.D. Thesis, 2007. [ detailed record ] [ full document ]
2006
T. Rinaldi and H. Markram, Altered neocortical microcircuitry in the valproic acid rat model of autism, Ph.D. Thesis, 2006. [ detailed record ] [ full document ]
Books
2006
A.J. Ijspeert, J. Buchli, A. Selverston, M. Rabinovich, M. Hasler, W. Gerstner, A. Billard, H. Markram and D. Floreano, Dynamical principles for neuroscience and intelligent biomimetic devices, Lausanne : EPFL, 2006. [ detailed record ]
Book Chapters
2011
M. Cockell, J. Billotte, F. Darbellay, F. Waldvogel, H. Markram and K. Markram, Frontiers research : seek, share & create, in Common knowledge : the challenge of transdisciplinarity, Lausanne, Switzerland : EPFL Press, 2011. [ detailed record ]
2005
H. Markram, X. Luo, G. Silberberg, M. Toledo-Rodriguez and A. Gupta, The Neocortical Microcircuit Database (NMDB). , in Databasing the Brain: From Data to Knowledge (Neuroinformatics), Wiley Press, 2005. [ detailed record ]
2004
W. Maass, T. Natschläger and H. Markram, Computational Models for Generic Cortical Microcircuits, in Computational Neuroscience: A Comprehensive Approach, Chapman & Hall/CRC, 2004. [ detailed record ]
A. Gupta, M. Toledo-Rodriguez, G. Silberberg and H. Markram, Interneuron Heterogeneity in the Neocortex, in Excitatory-Inhibitory Balance: Synapses, Circuits, Systems , Kluwer Academic Publishing, 2004. [ detailed record ]
2003
T. Natschläger, H. Markram and W. Maass, Computer models and analysis tools for neural microcircuits, in Neuroscience Databases: A Practical Guide,, Kluwer Academic Publishers , 2003. [ detailed record ]
W. Maass and H. Markram, Temporal integration in recurrent microcircuits, in The Handbook of Brain Theory and Neural Networks, MIT Press, 2003. [ detailed record ]
Patents
2007
H. Markram, T. Rinaldi, T. Markram, M. Rodriguez Bravo, B. Mattson and K. Kulangara, Methods For Treating And/Or Preventing Pervasive Developmental Disorders In A Subject, Patent # WO2007029063. [ detailed record ]
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