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José Pedro Rebelo Ferreira Marques
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Laboratory of functional and metabolic imaging
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Premier Assistant
birth date: 27.12.1977
nationality: Portuguese
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office(s):
CHF1612
phone(s): [+41 21 69] 37968
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BIOGRAPHY
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Undergraduate, Physics, University of Coimbra, 1995-1999
Doctoral Program, Biophysics, Prof. Eduardo Ducla Soares, IBEB (Instituto de Biofísica e Engenharia Biomédica), University of Lisbon, 2000-2001
PhD, "Effects of Dipolar Fields in NMR and MRI", Prof. Richard Bowtell, School of Physics and Astronomy, University of Nottingham, 2001-2004
Post Doc, EEG-fMRI in Epilepsy, Prof. Miguel Castelo-Branco, IBILI, University of Coimbra, 2005-2006
Premier Assistant, High Resolution Imaging at High Fields, Prof. Rolf Gruetter, CIBM, EPFL, 2007-now
Invited Lecturer, Department of Physics, University of Coimbra, Portugal, 2010 - now
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MAIN PUBLICATIONS
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Optimising the sequence parameters in Double Quantum CRAZED imaging, J. P. Marques, R. Bowtell, Magn. Res. Med, 51 (1): 148-157, 2004
Application of a Fourier Based Method for Calculating Susceptibility Induced Magnetic Field Perturbations, J. P. Marques, R. Bowtell, Conc. Magn. Res. B, 25 (1), 65 - 78, 2005
Intermolecular Multiple Quantum Coherences at High Magnetic Field: the Non-Linear Regime, J. P. Marques, S. Grant, S. Blackband, R. Bowtell, J. Chem. Phys, 123, 164311, 2005
Simulations of the BOLD effect using a realistic model of the vasculature, J. P. Marques, R. Bowtell, NMR in Biomedicine, 21(6), 553-565, 2008
ICA Decomposition of EEG signal for fMRI processing in Epilepsy, J. P. Marques, J. Rebola, P. Figueiredo, A. Pinto, F. Sales, M. Castelo-Branco, Human Brain Mapping, 30(9):2986-96, 2009
Investigation of high resolution fMRI by means of surface and array RF-coils at 7T, W. van der Zwaag, J. P. Marques, R. Gruetter, Magnetic Resonance Imaging, accepted
On the origin of the MR image phase contrast: An in vivo MR microscopy study of the rat brain at 14.1T, J. P. Marques, R. Maddage, V. Mlynarik, R. Gruetter, Neuroimage, 46(2), 345-352, 2009
Minimization of Nyquist ghosting for echo-planar imaging based fMRI at ultra-high fields based on a ‘negative read-out gradient’ strategy, W. van der Zwaag, J.P. Marques, H. Lei, N. Just, T. Kober, R. Gruetter, J. Magn Reson Imaging, 30(5), pp. 1171-1178, 2009
MP2RAGE, a self-bias field corrected sequence for improved segmentation and T1-mapping at high field, J.P. Marques, T. Kober, G. Krueger, W. van der Zwaag, P.-F. Van de Moortele and R. Gruetter, Neuroimage, 49 (2), pp. 1271-1281, 2010
In vivo visualization of cerebellar cortical layers using structural high field MRI, J.P. Marques, W. van der Zwaag, C. Granziera, G. Krueger and R. Gruetter, Radiology, 254 (3), pp. 942-948, 2010
Eddy current effects on a clinical 7T-68 cm bore scanner, N. Kickler, W. van der Zwaag, R. Mekle, T. Kober, J.P. Marques, G. Krueger and R. Gruetter, MAGMA, 23 (1), pp. 39-43, 2010
In vivo Structural Imaging of the Cerebellum, the Contribution of Ultra-High Fields, J.P. Marques, R., Gruetter, W. van der Zwaag, Cerebellum, in press
Head Motion Detection Using FID Navigators, T. Kober, J.P. Marques, R. Gruetter and G. Krueger, Magn. Res. Med., 66(1), pp. 135-143
Temporal SNR characteristics in segmented 3D-EPI at 7T, W. van der Zwaag, J.P. Marques, T. Kober, G. Glover, R. Gruetter, G. Krueger, Magnetic Resonance in Medicine
SA2RAGE: A new sequence for fast B1 +-mapping , F. Eggenschwiler, T. Kober, A.W. Magill, R. Gruetter, J.P. Marques, Magnetic Resonance in Medicine, in press
Human primary auditory cortex follows the shape of Heschl's Gyrus , S. da Costa, W. van der Zwaag, J.P. Marques, R.S.J. Frackowiak, S. Clarke, M. Saenz, Journal of Neuroscience 31 (40), pp. 14067-14075, 2011
In vivo assessment of myelination by phase imaging at high magnetic field , G.A. Lodygensky, J.P. Marques, R. Maddage, E. Perroud, S.V. Sizonenko, P.S. Hüppi, R. Gruetter , NeuroImage, in press
Fluid and White Matter Suppression with the MP2RAGE sequence, M. Tanner, G. Gambarota, T. Kober, G. Krueger, D. Erritzoe, J.P. Marques, R. Newbould, Journal of Magnetic Resonance Imaging, in press
Spread Spectrum magnetic resonance imaging, G. Puy, J.P. Marques, R. Gruetter, J-P Thiran, D. Van De Ville, P. Vandergheynst, Y. Wiaux, IEEE Transactions on Medical Imaging
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Reviewing Experience
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Magnetic Resonance in Medicine
Neuroimage
NMR in Biomedicine
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Other Publications
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George Morrison and José Marques, A conversation with Sir Peter Mansfield, europhysicsnews, 2006, volume 37(1), 26-30
José Marques and George Morrison, «Há um problem a de falta de confiança na ciência» (There is a problem of lack of trust in science), Gazeta de Física, 2006, 29(4), 16-20
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SUPERVISED THESIS
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- “Simultaneous acquisitionof EEG-fMRI in Epilepsy, J. Bartolo, Master Thesis, Universidade de Coimbra, 2007
- “Phase imaging of the in vivo rat at 14T”, Rajika Maddage, Masther Thesis, Universite Pierre & Marrie Curie, 2008
- “Imagerie à résonance magnétique : Mesure des paramètres de relaxation du cerveau sur la base d'Agar et Gd pour la réalisation d'un modèle” , Benoît Schaller, TP-V Project, EPFL, 2008
- “High resolution functional MRI, A study about activation in the human visual cortex”, Marlene Glauser, TP-IV Project,EPFL, 2008
- “Calcul des cartes de susceptibilité magnétique à l'aide d'IRM de phase”, Albin Gaignette, TP-IV Project,EPFL, 2010
- “Transmit Magnetic Field Mapping And Shimming at 7T”, Florent Eggenschwiler, Master Thesis, EPFL, 2010
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ABSTRACTS (Peer-Reviewed at Int. Conf.)
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2010
- J. P. Marques, R. Gruetter, MP2RAGE contrast optimization at 7T and applications, Proc. ISMRM 18th Scientific Meeting, Stockholm, Sweden, p. ???, 2010
- F. Eggenschwiler, A. Magill, R. Gruetter, J. P. Marques, Sa2RAGE - A new sequence for rapid 3D B1+ mapping with a wide sensitivity range, Proc. ISMRM 18th Scientific Meeting, Stockholm, Sweden, p. ???, 2010
- R. Maddage, J. P. Marques, R. Gruetter, Induced T1, T2* and phase changes following Manganese systemic administration at 14.1T, Proc. ISMRM 18th Scientific Meeting, Stockholm, Sweden, p. ???, 2010
2009
- T. Kober,J. Marques, R. Gruetter, and G. Krueger, Motion detection using FID navigator signals of MRI coil array elements,Annual Meeting European Society for Magnetic Resonance in Medicine and Biology (ESMRMB), Antalaya, p.367, 2009
- W. van der Zwaag, T. Kober, J. P. Marques, G. Glover, R. Gruetter, G. Krueger, Comparison of single-shot 2D EPI and segmented 3D EVI acquisition for fMRI at 7T, Proc. ISMRM 17th Scientific Meeting, Hawai, US, p. ????, 2009
- J. P. Marques, T. Kober, W. van der Zwaag, G. Krueger, P-F van Moortele and R. Gruetter, MP2RAGE contrast optimization at 7T and applications, Proc. ISMRM 17th Scientific Meeting, Hawai, US, p. 2698, 2009
- J. P. Marques, W. Van der Zwaag, C. Granziera, G. Krueger and R. Gruetter, In vivo visualization of cerebellar cortical layers using structural high field MRI, Proc. ISMRM 17th Scientific Meeting, Hawai, US, p. 969, 2009
- J. P. Marques, and R. Gruetter, Grey/white matter contrast in phase images: is it susceptibility or is it not?, Proc. ISMRM 17th Scientific Meeting, Hawai, US, p. 956, 2009
2008
- J. P. Marques, R. Maddage, and R. Gruetter,"Probing the role of deoxyhemoglobin in white-gray matter and subcortical gray matter contrast in phase imaging", Annual Meeting European Society for Magnetic Resonance in Medicine and Biology (ESMRMB), p330, 2008, Valencia, Spain – oral presentation
- T. Kober, W. van der Zwaag, J. Marques, R. Meuli, R. Gruetter, and G. Krueger, “Adaptive FID-navigators for respiration monitoring in multi-slice fMRI applications“, in Proc. ISMRM 16th Scientific Meeting, Toronto, Canada, p. 2470, 2008
- J. P. Marques, T. Kober, W. van der Zwaag, G. Krueger and R. Gruetter, “ MP2RAGE, a self-bias field corrected sequence for improved segmentation at high field.” 16th Scientific Meeting, Toronto, Canada, p. 1393, 2008
- J. P. Marques, C. Cudalbu, C. Poitry-Yamate, V. Mlynarik, and R. Gruetter,“ Phase Imaging of the in vivo Rat brain at 14.1 Tesla.” 16th Scientific Meeting, Toronto, Canada, p. 809, 2008 – oral presentation
- W. van der Zwaag, J. Marques, T. Kober, and R. Gruetter. A continuous Nyquist ghost correction for EPI-based fMRI. Proc. Intl. Soc. Mag. Reson. Med., 17 (2008), Toronto
- W. van der Zwaag, H. Lei, N. Just, J. Marques, and R. Gruetter. Minimization of Nyquist ghosting for fMRI at ultra-high fields based on a ‘negative read-out gradient’ strategy. Proc. Intl. Soc. Mag. Reson. Med., 17 (2008), Toronto
2006 - 2007
- J. Rebola, F. Sales, M. Castelo-Branco, J.P. Marques, “EEG Source localization and timecourse reconstruction with a combined ICA-SSLOFO method: Principles and simulation” , Human Brain Mapping (13), 2007
- J. Rebola, F. Sales, M. Castelo-Branco, J.P. Marques, “EEG Source localization and timecourse reconstruction with a combined ICA-SSLOFO method: Preliminary application in Temporal Lobe Epilepsy”, Human Brain Mapping (13), 2007
- J. P. Marques, P. Figueiredo, F. Sales, M. Castelo-Branco, “Using ICA decomposition of EEG signal in Simultaneous EEG-fMRI”, Epilepsia, 7th European Congress, 113, 2006 – oral presentation
- J. P. Marques, P. Figueiredo, F. Sales, M. Castelo-Branco, “On the usage of ICA decomposition of EEG signal for fMRI processing”, Human Brain Mapping (12), S72, 2006
- J. P. Marques, R. Bowtell, “Understanding the Intra- and Extravascular contributions to the BOLD effect through simulations”, Proc. Int. Soc. Magn. Reson. Med. (14), 896, 2006 – oral presentation
- J. P. Marques, F. Sales, M. Castelo-Branco, P. Figueiredo, “An ICA based method to process simultaneous EEG-fMRI in Epilepsy”, Proc. Int. Soc. Magn. Reson. Med. (14), 3293, 2006
2002-2005
- J. P. Marques, R. Bowtell, “Evaluation of a new method to correct effects of motion-induced B0-field variation during fMRI”, Proc. Int. Soc. Magn. Reson. Med. (13), 510, 2005 – oral presentation
- M. Poole, R.W. Bowtell, J.P. Marques, Volume Parcellation for Improved Efficiency of Dynamic Shimming, Proc. Int. Soc. Magn. Reson. Med. (13), 2005
- J. P. Marques, R. Bowtell, “Simulations of the BOLD effect using a realistic model of the vasculature”, Proc. Int. Soc. Magn. Reson. Med. (12), 1081, 2004
- J. P. Marques, R. Bowtell, “Evaluation of a Fourier Based Method for Calculating Susceptibility Induced Magnetic Field Perturbations”, Proc. Int. Soc. Magn. Reson. Med. (11), 1020, 2003. – oral presentation
- J. P. Marques, R. Bowtell, “Double Quantum CRAZED (DQC) experiment in inhomogeneous solutions”, Proc. Int. Soc. Magn. Reson. Med. (11), 1108, 2003
- J. P. Marques, R. Bowtell, “Optimising the signal to noise ratio in Double Quantum CRAZED imaging”, Proc. Int. Soc. Magn. Reson. Med. (10), 2287, 2002.
- R. Bowtell, J. P. Marques, S. Gutteridge, “Long Range Dipolar Field Effects in Liquid State NMR”, AMPERE2002 – oral presentation
- J.P. Marques, A. Lindote, J. Moreira, “Spectroscopy Studies at the AMS Experiment”, ICPS, 2000 – oral presentation
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