Arne Seitz

I like the idea of communicating with people from different scientific areas (e.g. biologist on one hand and optical engineers on the other hand) because solving interdisciplinary questions has always fascinated me during my research career.

Biography

04/1996-06/2000 Scientific co-worker at Philipps-University of Marburg, Dep. of Physical Chemistry 07/2000-10/2002 Post Doc at Max-Planck Unit for Structural Molecular Biology in Hamburg 11/2002-11/2005 Post Doc at European Molecular Biolohy Laboratory (EMBL), Cell Biology and Cell Biophysics Programme 11/2005-03/2009 Staff Scientist at Advanced Light Microscopy Facility, EMBL 04/2009- Head of Bioimaging and Optics platforme (BIOP), Ecole Polytechnique Fédérale de Lausanne (EPFL)

Publications

Selected publications

Roopa Rajashekar, David Liebl, Arne Seitz, and Michael Hensel Traffic, 2008 Sep 19.	Dynamic remodeling of the endosomal system during formation of salmonella-induced filaments by fntracellular salmonella enterica.
Seitz A., Terjung S., Belyaev Y., Pepperkok R. Imaging and Microscopy, 2008, GIT Verlag	High Content Screening Microscopy
Starkuviene V., Seitz A., Erfle H. and Pepperkok R. Methods Mol Biol. 2008;457:193-201.	Measuring secretory membrane traffic: a quantitative fluorescence microscopy approach
A. Seitz, T. Surrey EMBO-Journal 25 (2006) 267-77	Processive movement of single kinesins on crowded microtubules visualized using quantum dots.
A. Seitz, H. Kojima, K. Oiwa, E. M. Mandelkow, Y. H. Song, E. Mandelkow EMBO-Journal 21 (2002) 4896-4905.	Single-molecule investigation of the interference between kinesin, tau and MAP2c.

Teaching & PhD

Teaching

Life Sciences Engineering

Courses

Bioimage informatics

The course provides a comprehensive overview of methods, algorithms, and computer tools used in in computational bioimaging and bioimage analysis. It exposes the fundamental concepts and the practical computer solutions to extract quantitative information from multidimensional images.

Advanced Microscopy for Life Science

For further information, please get in contact with the instructor or have a look on the following web-site: http://biop.epfl.ch/

Image Processing for Life Science

Registration details will be announced via email. It takes place from September to December & intends to teach image processing with a strong emphasis of applications in life sciences. The idea is to enable the participants to solve image processing questions via workflows independently.

Methods: from disease models to therapy

This course will describe methods underlying translational approaches from disease modeling and characterization to therapeutic applications. The presented techniques will be complemented by hands-on rotations in the technological platforms of the School of Life Sciences.

Biomicroscopy II

Introduction to the different contrast enhancing methods in optical microscopy. Basic hands-on experience with optical microscopes at EPFL's BioImaging and Optics Facility. How to investigate biological samples? How to obtain high quality images?

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