Giovanni Dietler
Nationality: Suisse
Phone number
+41 (0)21 693 04 46
Publications
2024
Journal Articles
Hierarchical Protofilament Intertwining Rules the Formation of Mixed‐Curvature Amyloid Polymorphs
Advanced Science. 2024. DOI : 10.1002/advs.202402740.An Optical Fiber-Based Nanomotion Sensor for Rapid Antibiotic and Antifungal Susceptibility Tests
Nano Letters. 2024. DOI : 10.1021/acs.nanolett.3c03781.2022
Journal Articles
Effect of antibiotics on mechanical properties of Bordetella pertussis examined by atomic force microscopy
Micron. 2022. DOI : 10.1016/j.micron.2022.103229.2021
Journal Articles
The Nt17 Domain and its Helical Conformation Regulate the Aggregation, Cellular Properties and Neurotoxicity of Mutant Huntingtin Exon 1
Journal of Molecular Biology. 2021. DOI : 10.1016/j.jmb.2021.167222.Nanomechanical bio-sensing for fast and reliable detection of viability and susceptibility of microorganisms
Sensors and Actuators B: Chemical. 2021. DOI : 10.1016/j.snb.2021.130650.Nanomotion Spectroscopy as a New Approach to Characterize Bacterial Virulence
Microorganisms. 2021. DOI : 10.3390/microorganisms9081545.Environmental Control of Amyloid Polymorphism by Modulation of Hydrodynamic Stress
Acs Nano. 2021. DOI : 10.1021/acsnano.0c07570.2020
Journal Articles
Fiber-Tip Polymer Microcantilever for Fast and Highly Sensitive Hydrogen Measurement
ACS Applied Materials & Interfaces. 2020. DOI : 10.1021/acsami.0c06179.Single yeast cell nanomotions correlate with cellular activity
Science Advances. 2020. DOI : 10.1126/sciadv.aba3139.Effects of sedimentation, microgravity, hydrodynamic mixing and air-water interface on alpha-synuclein amyloid formation
Chemical Science. 2020. DOI : 10.1039/d0sc00281j.A perspective view on the nanomotion detection of living organisms and its features
Journal Of Molecular Recognition. 2020. DOI : 10.1002/jmr.2849.Yeast Nanometric Scale Oscillations Highlights Fibronectin Induced Changes in C. albicans
Fermentation-Basel. 2020. DOI : 10.3390/fermentation6010028.Structural and DNA binding properties of mycobacterial integration host factor mIHF
Journal of Structural Biology (JSB). 2020. DOI : 10.1016/j.jsb.2019.107434.Adaptation of Pseudomonas aeruginosa to constant sub-inhibitory concentrations of quaternary ammonium compounds
Environmental Science: Water Research & Technology. 2020. DOI : 10.1039/C9EW01056D.The role of xanthophylls in the supramolecular organization of the photosynthetic complex LHCII in lipid membranes studied by high-resolution imaging and nanospectroscopy
Biochimica Et Biophysica Acta-Bioenergetics. 2020. DOI : 10.1016/j.bbabio.2019.148117.Electrical Excitation of Long-Range Surface Plasmons in PC/OLED Structure with Two Metal Nanolayers
Nano-Micro Letters. 2020. DOI : 10.1007/s40820-020-0369-7.Conference Papers
Gap Plasmon Enhanced High Spatial Resolution Imaging by Photothermal Induced Resonance in Visible Spectral Range
2020. 64th Annual Meeting of the Biophysical-Society, San Diego, CA, Feb 15-19, 2020. p. 618A - 618A. DOI : 10.1016/j.bpj.2019.11.3333.Theses
Nanoscale Characterization of Amyloid Fibrils and Biomacromolecules by Atomic Force Microscopy Approaches
Lausanne, EPFL, 2020. DOI : 10.5075/epfl-thesis-8155.2019
Journal Articles
Gap-Plasmon-Enhanced High-Spatial-Resolution Imaging by Photothermal-Induced Resonance in the Visible Range
Nano Letters. 2019. DOI : 10.1021/acs.nanolett.9b03844.Infrared nanospectroscopic mapping of a single metaphase chromosome
Nucleic Acids Research. 2019. DOI : 10.1093/nar/gkz630.A Rapid Unraveling of the Activity and Antibiotic Susceptibility of Mycobacteria
Antimicrobial Agents And Chemotherapy. 2019. DOI : 10.1128/AAC.02194-18.Experimenting with knots
European Physical Journal-Special Topics. 2019. DOI : 10.1140/epjst/e2019-800151-0.Europium-Doped CsPbI2Br for Stable and Highly Efficient Inorganic Perovskite Solar Cells
Joule. 2019. DOI : 10.1016/j.joule.2018.10.008.Universal Soft Robotic Microgripper
Small. 2019. DOI : 10.1002/smll.201803870.Conference Papers
Identification and Study of Polymorphic Structures of Hierarchically Twisted Amyloid Fibrils by Atomic Force Microscope
2019. 63rd Annual Meeting of the Biophysical-Society, Baltimore, MD, Mar 02-06, 2019. p. 50A - 50A. DOI : 10.1016/j.bpj.2018.11.317.Chemically etched plastic optical fiber probe for near-field scanning optical microscopy in liquids
2019. Conference on Imaging, Manipulation, and Analysis of Biomolecules, Cells, and Tissues XVII, San Francisco, CA, Feb 04-06, 2019. DOI : 10.1117/12.2509098.Theses
Development of an AFM-based nanomotion detection device for microbiological samples
Lausanne, EPFL, 2019. DOI : 10.5075/epfl-thesis-8898.Scanning near-field optical microscopy with new probes and feedback modes
Lausanne, EPFL, 2019. DOI : 10.5075/epfl-thesis-9504.2018
Journal Articles
Two-point correlation function of ring polymers: Experiments and numerical simulations for the case of circular DNA in 2 dimensions
Reactive & Functional Polymers. 2018. DOI : 10.1016/j.reactfunctpolym.2018.10.001.Identification of Oxidative Stress in Red Blood Cells with Nanoscale Chemical Resolution by Infrared Nanospectroscopy
International Journal Of Molecular Sciences. 2018. DOI : 10.3390/ijms19092582.Periodic Motion of Sedimenting Flexible Knots
Physical Review Letters. 2018. DOI : 10.1103/PhysRevLett.121.127801.Conference Papers
Long-life plastic optical fiber probes for scanning near-field optical microscope
2018. Biomedical Imaging and Sensing Conference, Yokohama, JAPAN, Apr 25-27, 2018. DOI : 10.1117/12.2319274.Reviews
DNA-protein interactions explored by atomic force microscopy
Seminars In Cell & Developmental Biology. 2018. DOI : 10.1016/j.semcdb.2017.07.015.AFM contribution to unveil pro- and eukaryotic cell mechanical properties
Seminars In Cell & Developmental Biology. 2018. DOI : 10.1016/j.semcdb.2017.08.032.Theses
Atomic Force Microscopy of Biological Systems: Quantitative Imaging and Nanomotion Detection
Lausanne, EPFL, 2018. DOI : 10.5075/epfl-thesis-8334.2017
Journal Articles
Spatial organization of DNA sequences directs the assembly of bacterial chromatin by a nucleoid-associated protein
Journal of Biological Chemistry. 2017. DOI : 10.1074/jbc.M117.780239.Nanomechanical sensor applied to blood culture pellets: a fast approach to determine the antibiotic susceptibility against agents of bloodstream infections
Clinical Microbiology And Infection. 2017. DOI : 10.1016/j.cmi.2016.12.028.Mitochondrial activity detected by cantilever based sensor
Mechanical Sciences. 2017. DOI : 10.5194/ms-8-23-2017.Nanomechanics of multidomain neuronal cell adhesion protein contactin revealed by single molecule AFM and SMD
Scientific Reports. 2017. DOI : 10.1038/s41598-017-09482-w.Hyperplectonemes: A Higher Order Compact and Dynamic DNA Self-Organization
Nano Letters. 2017. DOI : 10.1021/acs.nanolett.6b05294.High-Q surface modes in photonic crystal/iron garnet film heterostructures for sensor applications
Jetp Letters. 2017. DOI : 10.1134/S0021364016220094.Amyloid Single Cell Cytotoxicity Assays by Nanomotion Detection
Cell Death Discovery. 2017. DOI : 10.1038/cddiscovery.2017.53.Spatial confinement induces hairpins in nicked circular DNA
Nucleic Acids Research. 2017. DOI : 10.1093/nar/gkx098.Nanoplasmonic mid-infrared biosensor for in vitro protein secondary structure detection
Light: Science and Applications. 2017. DOI : 10.1038/lsa.2017.29.Conference Papers
MechStiff: A New Tool for Evaluating Stress-Induced Dynamics and Application to Cell Adhesion Proteins
2017. 61st Annual Meeting of the Biophysical-Society, New Orleans, LA, FEB 11-15, 2017. p. 45A - 46A. DOI : 10.1016/j.bpj.2016.11.286.Theses
Real-time binding kinetics of ligand-receptor interactions : development and application of a label-free optical biosensor for living bacteria
Lausanne, EPFL, 2017. DOI : 10.5075/epfl-thesis-8015.2016
Journal Articles
Nanoscale studies link amyloid maturity with polyglutamine diseases onset
Scientific Reports. 2016. DOI : 10.1038/srep31155.Magneto-optical plasmonic heterostructure with ultranarrow resonance for sensing applications
Scientific Reports. 2016. DOI : 10.1038/srep28077.Kinetics of Antibody Binding to Membranes of Living Bacteria Measured by a Photonic Crystal-Based Biosensor
Biosensors-Basel. 2016. DOI : 10.3390/bios6040052.A critical concentration of N-terminal pyroglutamylated amyloid beta drives the misfolding of Ab1-42 into more toxic aggregates
International Journal Of Biochemistry & Cell Biology. 2016. DOI : 10.1016/j.biocel.2016.08.037.Preparation of Well-Defined DNA Samples for Reproducible Nanospectroscopic Measurements
Small. 2016. DOI : 10.1002/smll.201601711.The persistence length of adsorbed dendronized polymers
Nanoscale. 2016. DOI : 10.1039/c6nr02665f.The persistence length of adsorbed dendronized polymers (vol 8, pg 13498, 2016)
Nanoscale. 2016. DOI : 10.1039/c6nr90204a.A Robust Actin Filaments Image Analysis Framework
Plos Computational Biology. 2016. DOI : 10.1371/journal.pcbi.1005063.Can Dissipative Properties of Single Molecules Be Extracted from a Force Spectroscopy Experiment?
Biophysical Journal. 2016. DOI : 10.1016/j.bpj.2016.08.018.Tuning knot abundance in semiflexible chains with crowders of different sizes: a Monte Carlo study of DNA chains
Soft Matter. 2016. DOI : 10.1039/c6sm01327a.Toward an Effective Control of DNA's Submolecular Conformation on a Surface
Macromolecules. 2016. DOI : 10.1021/acs.macromol.5b01827.Micro- and nanoscale hierarchical structure of core-shell protein microgels
Journal of Materials Chemistry B. 2016. DOI : 10.1039/c6tb02683d.Conference Papers
Label-Free Optical Biosensor Based on Photonic Crystal Surface Waves Reveals Binding Kinetics of Antibodies to Living Bacteria in Real Time
2016. 60th Annual Meeting of the Biophysical-Society, Los Angeles, CA, FEB 27-MAR 02, 2016. p. 518A - 518A. DOI : 10.1016/j.bpj.2015.11.2770.Reviews
AFM-Based Single Molecule Techniques: Unraveling the Amyloid Pathogenic Species
Current Pharmaceutical Design. 2016. DOI : 10.2174/1381612822666160518141911.2015
Journal Articles
Concentration-dependent and surface-assisted self-assembly properties of a bioactive estrogen receptor alpha-derived peptide
Journal Of Peptide Science. 2015. DOI : 10.1002/psc.2730.Detecting nanoscale vibrations as signature of life
Proceedings Of The National Academy Of Sciences Of The United States Of America (PNAS). 2015. DOI : 10.1073/pnas.1415348112.Influence of DNA Binding Dyes on Bare DNA Structure Studied with Atomic Force Microscopy
Macromolecules. 2015. DOI : 10.1021/ma502537g.Nanoscale resolution in infrared imaging of protein-containing lipid membranes
Nanoscale. 2015. DOI : 10.1039/c5nr03090k.Effects of physiological self-crowding of DNA on shape and biological properties of DNA molecules with various levels of supercoiling
Nucleic Acids Research. 2015. DOI : 10.1093/nar/gkv055.Detect the life through atomic force microscopy
M S-Medecine Sciences. 2015. DOI : 10.1051/medsci/20153104008.Single molecule fluorescence resonance energy transfer scanning near-field optical microscopy: potentials and challenges
Faraday Discussions. 2015. DOI : 10.1039/c5fd00097a.Influence of the β-sheet content on the mechanical properties of aggregates during amyloid fibrillization
Angewandte Chemie (International ed. in English). 2015. DOI : 10.1002/anie.201409050.Upstream Binding of Idling RNA Polymerase Modulates Transcription Initiation from a Nearby Promoter
Journal of Biological Chemistry. 2015. DOI : 10.1074/jbc.M114.628131.Infrared nanospectroscopy characterization of oligomeric and fibrillar aggregates during amyloid formation
Nature Communications. 2015. DOI : 10.1038/ncomms8831.Theses
New Insights Into Amyloid Formation and Structure by Innovative Atomic Force Microscopy Methods
Lausanne, EPFL, 2015. DOI : 10.5075/epfl-thesis-6597.Research in the field of single biopolymers using scanning probe microscopy
Lausanne, EPFL, 2015. DOI : 10.5075/epfl-thesis-6372.From polymers to gene regulation : a bottom up approach to the bacterial chromatin
Lausanne, EPFL, 2015. DOI : 10.5075/epfl-thesis-6785.2014
Journal Articles
The H50Q Mutation Enhances alpha-Synuclein Aggregation, Secretion, and Toxicity
Journal of Biological Chemistry. 2014. DOI : 10.1074/jbc.M114.553297.Real-Time Monitoring of Protein Conformational Changes Using a Nano-Mechanical Sensor
Plos One. 2014. DOI : 10.1371/journal.pone.0103674.Assessing dystrophies and other muscle diseases at the nanometer scale by atomic force microscopy
Nanomedicine. 2014. DOI : 10.2217/nnm.12.215.Functional Dissection of Intersubunit Interactions in the EspR Virulence Regulator of Mycobacterium tuberculosis
Journal of Bacteriology. 2014. DOI : 10.1128/Jb.00039-1.Force-induced globule-coil transition in laminin binding protein and its role for viral-cell membrane fusion
Journal Of Molecular Recognition. 2014. DOI : 10.1002/jmr.2399.Nanoscale spatially resolved infrared spectra from single microdroplets
Lab On A Chip. 2014. DOI : 10.1039/c3lc51219c.One-Pot Semisynthesis of Exon 1 of the Huntingtin Protein: New Tools for Elucidating the Role of Posttranslational Modifications in the Pathogenesis of Huntington's Disease
Angewandte Chemie International Edition. 2014. DOI : 10.1002/anie.201307510.2013
Journal Articles
Mechanical properties of biological specimens explored by atomic force microscopy
Journal of Physics D : Applied Physics. 2013. DOI : 10.1088/0022-3727/46/13/133001.Rapid detection of bacterial resistance to antibiotics using AFM cantilevers as nanomechanical sensors
Nature Nanotechnology. 2013. DOI : 10.1038/nnano.2013.120.Molecular Architecture of Plant Thylakoids under Physiological and Light Stress Conditions: A Study of Lipid-Light-Harvesting Complex II Model Membranes
The Plant Cell. 2013. DOI : 10.1105/tpc.113.113076.Blue surface plasmon propagation along thin gold film-gas interface and its use for sensitive nitrogen dioxide detection
Optics Communications. 2013. DOI : 10.1016/j.optcom.2013.05.058.Antibiotic-induced modifications of the stiffness of bacterial membranes
Journal of Microbiological Methods. 2013. DOI : 10.1016/j.mimet.2013.01.022.A single-molecule stretching method for lateral and normal AFM lever calibration
Nanotechnology. 2013. DOI : 10.1088/0957-4484/24/36/365703.Luminescence studies on photostimulable phosphor CsBr:Eu2+
Radiation Effects And Defects In Solids-Incorporating Plasma Science And Plasma Technology. 2013. DOI : 10.1080/10420150.2012.743552.A universal fluid cell for the imaging of biological specimens in the atomic force microscope
Microscopy Research And Technique. 2013. DOI : 10.1002/jemt.22174.Photonic Crystal Biosensor Based on Optical Surface Waves
Sensors. 2013. DOI : 10.3390/s130202566.Dependence of the most probable and average bond rupture force on the force loading rate: First order correction to the Bell-Evans model
Journal Of Applied Physics. 2013. DOI : 10.1063/1.4815869.Time-Lapse AFM Imaging of DNA Conformational Changes Induced by Daunorubicin
Nano Letters. 2013. DOI : 10.1021/nl403361f.Sedimentation of macroscopic rigid knots and its relation to gel electrophoretic mobility of DNA knots
Scientific Reports. 2013. DOI : 10.1038/srep01091.Combination of fluorescence microscopy and nanomotion detection to characterize bacteria
Journal Of Molecular Recognition. 2013. DOI : 10.1002/jmr.2306.Fine DNA structure revealed by constant height frequency modulation AFM imaging
European Polymer Journal. 2013. DOI : 10.1016/j.eurpolymj.2013.03.026.Conference Papers
Dependence of the Most Probable and Average Bond Rupture Forces on the Force Loading Rate in Single Molecule Dynamic Force Spectroscopy Experiment: First Order Correction to the Bell-Evans Model
2013. 57th Annual Meeting of the Biophysical-Society. p. 381A - 381A. DOI : 10.1016/j.bpj.2012.11.2125.Theses
Frequency Modulation Atomic Force Microscopy on Biomolecules : Force Measurements and High Resolution Images of DNA
Lausanne, EPFL, 2013. DOI : 10.5075/epfl-thesis-5846.Patents
Nanoscale motion detector
US2022195489 ; US11299762 ; JP6782274 ; PL2766722 ; ES2710191 ; TR201901893 ; DK2766722 ; EP2766722 ; US2018312898 ; JP2018136332 ; JP2014528591 ; US2014287403 ; EP2766722 ; WO2013054311 . 2013.2012
Journal Articles
Atomic Force Microscopy Stiffness Tomography on Living Arabidopsis thaliana Cells Reveals the Mechanical Properties of Surface and Deep Cell-Wall Layers during Growth
Biophysical Journal. 2012. DOI : 10.1016/j.bpj.2012.06.046.Differential peptide binding to CD40 evokes counteractive responses
Human Immunology. 2012. DOI : 10.1016/j.humimm.2012.02.019.Differential peptide binding to CD40 evokes counteractive responses (vol 73, pg 465, 2012)
Human Immunology. 2012. DOI : 10.1016/j.humimm.2012.07.001.Size-dependent hydrogen uptake behavior of Pd nanoparticles revealed by photonic crystal surface waves
Applied Physics Letters. 2012. DOI : 10.1063/1.3690085.Quantifying supercoiling-induced denaturation bubbles in DNA
Soft Matter. 2012. DOI : 10.1039/c2sm26089a.Force volume and stiffness tomography investigation on the dynamics of stiff material under bacterial membranes
Journal Of Molecular Recognition. 2012. DOI : 10.1002/jmr.2171.FM-AFM constant height imaging and force curves: high resolution study of DNA-tip interactions
Journal of molecular recognition : JMR. 2012. DOI : 10.1002/jmr.2212.Controlling a Single DNA Molecule in an Electric Field by Means of In Situ Atomic Force Microscopy
Journal Of The Electrochemical Society. 2012. DOI : 10.1149/2.008207jes.OpenFovea: open-source AFM data processing software
Nature Methods. 2012. DOI : 10.1038/nmeth.2112.Measurement of intrinsic properties of amyloid fibrils by the peak force QNM method
Nanoscale. 2012. DOI : 10.1039/c2nr30768e.Stiffness tomography exploration of living and fixed macrophages
Journal Of Molecular Recognition. 2012. DOI : 10.1002/jmr.2184.Theses
Study of Topoisomerase-DNA Interaction Using Atomic Force Microscopy
Lausanne, EPFL, 2012. DOI : 10.5075/epfl-thesis-5300.Investigation of Biophysical Properties of Biomolecules by Means of Atomic Force Microscopy
Lausanne, EPFL, 2012. DOI : 10.5075/epfl-thesis-5598.Statistical Study of the Unfolding of Multimodular Proteins and their Energy Landscape by Atomic Force Microscopy
Lausanne, EPFL, 2012. DOI : 10.5075/epfl-thesis-5440.2011
Journal Articles
Atypical DNA recognition mechanism used by the EspR virulence regulator of Mycobacterium tuberculosis
Molecular Microbiology. 2011. DOI : 10.1111/j.1365-2958.2011.07813.x.Human topoisomerase II-DNA interaction study by using atomic force microscopy
Febs Letters. 2011. DOI : 10.1016/j.febslet.2011.08.051.Nonkinetic Modeling of the Mechanical Unfolding of Multimodular Proteins: Theory and Experiments
Biophysical Journal. 2011. DOI : 10.1016/j.bpj.2011.07.047.Tightening of DNA knots by supercoiling facilitates their unknotting by type II DNA topoisomerases
Proceedings Of The National Academy Of Sciences Of The United States Of America (PNAS). 2011. DOI : 10.1073/pnas.1016150108.DNA knots and DNA supercoiling
Cell Cycle. 2011. DOI : 10.4161/cc.10.9.15293.Conformation of Ring Polymers in 2D Constrained Environments
Physical Review Letters. 2011. DOI : 10.1103/PhysRevLett.106.248301.Theses
Scanning Near-Field Optical Microscopy of Living Cells in Liquid, Elaboration of New SNOM Probes and Detection Methods
Lausanne, EPFL, 2011. DOI : 10.5075/epfl-thesis-4984.Book Chapters
Atomic Force Microscopy Investigation of DNA-Drug Interactions
Methods for Studying Nucleic Acid/Drug Interactions; Boca Ranton: CRC Press, 2011. p. 185 - 195.2010
Journal Articles
Near-field scanning optical microscopy using polymethylmethacrylate optical fiber probes
Ultramicroscopy. 2010. DOI : 10.1016/j.ultramic.2009.11.011.Microcontroller-driven fluid-injection system for atomic force microscopy
Review of Scientific Instruments. 2010. DOI : 10.1063/1.3285262.Force spectroscopy of barnase-barstar single molecule interaction
Journal of Molecular Recognition. 2010. DOI : 10.1002/jmr.1030.Universal bond correlation function for two-dimensional polymer rings
Europhysics Letters - European Physical Society Letters (EPL). 2010. DOI : 10.1209/0295-5075/91/68002.Excluded Volume Effects on Semiflexible Ring Polymers
Nano Letters. 2010. DOI : 10.1021/nl1003575.Understanding amyloid aggregation by statistical analysis of atomic force microscopy images
Nature Nanotechnology. 2010. DOI : 10.1038/nnano.2010.59.Stable -Synuclein Oligomers Strongly Inhibit Chaperone Activity of the Hsp70 System by Weak Interactions with J-domain Co-chaperones
Journal of Biological Chemistry. 2010. DOI : 10.1074/jbc.M110.127753.Characterization of glycoprotein E C-End of West Nile virus and evaluation of its interaction force with alpha V beta 3 integrin as putative cellular receptor
Biochemistry-Moscow. 2010. DOI : 10.1134/S0006297910040115.Supercoiling Induces Denaturation Bubbles in Circular DNA
Physical Review Letters. 2010. DOI : 10.1103/PhysRevLett.105.208101.Scanning Near-field Optical Microscopy-based Study of Local Dynamics of Receptor-Ligand Interactions at the Single Molecule Level
Laser Physics. 2010. DOI : 10.1134/S1054660X09170125.Conference Papers
Ultrasharp carbon whisker optical fiber probes for scanning near-field optical microscopy
2010. Conference On Nanophotonics III, Brussels, BELGIUM, APR 12-16, 2010. DOI : 10.1117/12.853697.Theses
Scanning Near-Field Optical Microscopy Study of Biomolecules, Elaboration of New SNOM Probes and Detection Methods
Lausanne, EPFL, 2010. DOI : 10.5075/epfl-thesis-4779.DNA Topology : A Biophysical Study of DNA Rings, Knots, and Catenanes by Means of Atomic Force Microscopy and Numerical Simulations
Lausanne, EPFL, 2010. DOI : 10.5075/epfl-thesis-4866.Book Chapters
Finite-Elemente-Analyse von mikroskopischen biologischen Strukturen, Bildgebung und Messung durch Rasterkraftmikroskopie
Einführung in die Nanobiomechanik; Weinheim: WILEY-VCH Verlag GmbH & Co. KGaA, 2010. p. 183 - 199.2009
Journal Articles
Stiffness Tomography by Atomic Force Microscopy
Biophysical Journal. 2009. DOI : 10.1016/j.bpj.2009.05.010.Temperature-Controlled Assembly of High Ordered/Disordered Dodecylamine Layers on HOPG: Consequences for DNA Patterning
Langmuir. 2009. DOI : 10.1021/la803308j.Persistence length and scaling properties of single-stranded DNA adsorbed on modified graphite
The Journal of Chemical Physics. 2009. DOI : 10.1063/1.3216111.Registration of long-range surface plasmon resonance by angle-scanning feedback and its implementation for optical hydrogen sensing
New Journal of Physics. 2009. DOI : 10.1088/1367-2630/11/6/063049.Intracellular nanomanipulation by a photonic-force microscope with real-time acquisition of a 3D stiffness matrix
Nanotechnology. 2009. DOI : 10.1088/0957-4484/20/28/285709.Conference Papers
Scaling of double and single stranded DNA
2009. Knots and soft-matter physics: Topology of polymers and related topics in physics, mathematics and biology, Kyoto, Aug 26- Aug 29, 2009. p. 75 - 79.Talks
Complex studies of interactions between flaviviruses and laminin binding protein
34th Congress of the Federation-of-European-Biochemical-Societies, Prague, CZECH REPUBLIC, JUL 04-09, 2009.2008
Journal Articles
The promotion of secondary structures in single-stranded DNA by drugs that bind to duplex DNA: an atomic force microscopy study
Nanotechnology. 2008. DOI : 10.1088/0957-4484/19/38/384016.Single molecule fluorescence resonance energy transfer scanning near-field optical microscopy
Chemical Physics Letters. 2008. DOI : 10.1016/j.cplett.2007.12.064.Immunochernical and single molecule force spectroscopy studies of specific interaction between the laminin binding protein and the West Nile virus surface glycoprotein E domain II
JOURNAL OF MOLECULAR RECOGNITION. 2008. DOI : 10.1002/jmr.866.Elastic membrane heterogeneity of living cells revealed by stiff nanoscale membrane domains
Biophysical Journal. 2008. DOI : 10.1529/biophysj.107.112862.Conformation of Circular DNA in Two Dimensions
Physical Review Letters. 2008. DOI : 10.1103/PhysRevLett.101.148103.Force spectroscopy of the fibrin(ogen) - Fibrinogen interaction
BIOPOLYMERS. 2008. DOI : 10.1002/bip.20910.Single-molecule force spectroscopy of a protein globule covalently bound to a calcite surface
RUSSIAN JOURNAL OF PHYSICAL CHEMISTRY B. 2008. DOI : 10.1134/S1990793108030032.Conference Papers
Single-molecule avidin-biotin association reaction studied by force-clamp spectroscopy
2008. 9th International Conference on Scanning Probe Microscopy, Sensors and Nanostructures, Jeju, SOUTH KOREA, JUN 10-14, 2007. p. 1135 - 1139. DOI : 10.1016/j.ultramic.2008.04.058.Scanning near-field optical microscope based on a double resonant fibre probe montage and equipped with time-gated photon detection
2008. 9th International Conference on Near-Field Optics, Nanophotonics and Related Techniques, Lausanne, SWITZERLAND, SEP 10-15, 2006. p. 287 - 292. DOI : 10.1111/j.1365-2818.2008.01902.x.Reviews
Probing nanomechanical properties from biomolecules to living cells
PFLUGERS ARCHIV-EUROPEAN JOURNAL OF PHYSIOLOGY. 2008. DOI : 10.1007/s00424-008-0448-y.Theses
Physical properties and interactions of biomolecules : an atomic force microscopy study
Lausanne, EPFL, 2008. DOI : 10.5075/epfl-thesis-4101.Scaling properties of DNA knots studied by atomic force microscopy
Lausanne, EPFL, 2008. DOI : 10.5075/epfl-thesis-4041.Cryo-AFM development for high resolution DNA imaging and spectroscopy
Lausanne, EPFL, 2008. DOI : 10.5075/epfl-thesis-4035.Book Chapters
Finite Element Analysis of Microscopic Biological Structures
The World of Nano-Biomechanics: Mechanical Imaging and Measurement by Atomic Force MIcroscopy; Amsterdam: Elesevier, 2008. p. 221 - 240.2007
Journal Articles
Characterization of MAP1B heavy chain interaction with actin
Brain Research Bulletin. 2007. DOI : 10.1016/j.brainresbull.2006.12.003.Subwavelength-size local fluorescent sources based on color centers in LiF for scanning near-field optical microscopy
Journal of Luminescence. 2007. DOI : 10.1016/j.jlumin.2006.01.190.Techniques for measuring microtubule stiffness
Current Nanoscience. 2007. DOI : 10.2174/157341307779940526.Conference Papers
Scanning near-field optical microscope based on double-resonant fiber probe montage and its operation in liquids - art. no. 67282D
2007. ICONO 2007 Conference, Minsk, BYELARUS, MAY 28-JUN 01, 2007. DOI : 10.1117/12.752433.2006
Journal Articles
Laser nanotraps and nanotweezers for cold atoms: 3D gradient dipole force trap in the vicinity of scanning near-field optical microscope tip
Optics Communications. 2006. DOI : 10.1016/j.optcom.2005.09.077.Numerical simulation of gel electrophoresis of DNA knots in weak and strong electric fields
Biophysical Journal. 2006. DOI : 10.1529/biophysj.105.070128.Quantum control of exciton states in clusters of resonantly interacting fluorescent particles using biharmonic laser pumping
Physical Review B. 2006. DOI : 10.1103/PhysRevB.74.165329.Observation of single-stranded DNA on mica and highly oriented pyrolytic graphite by atomic force microscopy
Febs Letters. 2006. DOI : 10.1016/j.febslet.2006.09.017.Simulations of electrophoretic collisions of DNA knots with gel obstacles
Journal of Physics: Condensed Matter. 2006. DOI : 10.1088/0953-8984/18/14/S02.Kinetics of the interaction of desAABB-fibrin monomer with immobilized fibrinogen
Biopolymers. 2006. DOI : 10.1002/bip.20529.Study of DNA in "glasslike state" by atomic force microscopy: Importance of substrates
Japanese Journal of Applied Physics Part 1-Regular Papers Brief Communications & Review Papers. 2006. DOI : 10.1143/JJAP.45.2345.Experimental preparation of entangled Bell's vacuum-single exciton and vacuum-biexciton states for pair centers of neodymium ions in a crystal
Optics Communications. 2006. DOI : 10.1016/j.optcom.2005.08.032.2005
Journal Articles
Interactive measurement and characterization of DNA molecules by analysis of AFM images
Cytometry Part A. 2005. DOI : 10.1002/cyto.a.20105.Interactions between NEEP21, GRIP1 and GluR2 regulate sorting and recycling of the glutamate receptor subunit GluR2
Embo Journal. 2005. DOI : 10.1038/sj.emboj.7600755.Functional dynamics of PDZ binding domains: A normal-mode analysis
Biophysical Journal. 2005. DOI : 10.1529/biophysj.104.055004.Scaling exponents and probability distributions of DNA end-to-end distance
Physical Review Letters. 2005. DOI : 10.1103/PhysRevLett.95.158105.Growth of Pt clusters electrodeposited onto boron-doped diamond films
Thin Solid Films. 2005. DOI : 10.1016/j.tsf.2005.04.068.Coherent fluorescence resonance energy transfer in symmetrical clusters of fluorescent centers
Chemical Physics Letters. 2005. DOI : 10.1016/j.cplett.2004.12.048.Detection of cruciform extrusion in DNA by temperature-gradient gel electrophoresis
Analytical Biochemistry. 2005. DOI : 10.1016/j.ab.2005.05.017.Gradient of Rigidity in the Lamellipodia of Migrating Cells Revealed by Atomic Force Microscopy
Biophysical Journal. 2005. DOI : 10.1529/biophysj.104.052316.Superficial and deep changes of cellular mechanical properties following cytoskeleton disassembly
Cell Motility and the Cytoskeleton. 2005. DOI : 10.1002/cm.20086.2004
Journal Articles
Complex characterization of physiology solution based magnetic fluid
Indian Journal of Engineering and Materials Sciences. 2004.Shear force distance control in a scanning near-field optical microscope: in resonance excitation of the fiber probe versus out of resonance excitation
Ultramicroscopy. 2004. DOI : 10.1016/j.ultramic.2004.01.003.Clusters and superlattices of resonantly interacting fluorescence centers as quantum computer hardware
Laser Physics. 2004.Folding of small RNAs displaying the GNC base-pattern: implications for the self-organization of the genetic system
Journal of Theoretical Biology. 2004. DOI : 10.1016/j.jtbi.2003.11.015.Mechanical Properties of Microtubules Explored Using the Finite Elements Method
ChemPhysChem. 2004. DOI : 10.1002/cphc.200300799.Active solubilization and refolding of stable protein aggregates by cooperative unfolding action of individual hsp70 chaperones
Journal of Biological Chemistry. 2004. DOI : 10.1074/jbc.M405627200.Force spectroscopy with a small dithering of AFM tip: A method of direct and continuous measurement of the spring constant of single molecules and molecular complexes
Biophysical Journal. 2004. DOI : 10.1016/S0006-3495(04)74192-2.Coherent fluorescence resonance energy transfer between two dipoles: full quantum electrodynamics approach
Journal of Modern Optics. 2004. DOI : 10.1080/09500340410001664728.Oscillation modes of microtubules
Biology of the Cell. 2004. DOI : 10.1016/j.biolcel.2004.09.002.Theses
Quasistatic and dynamic force microscopy of single antigen-antibody complexes and fibrin-fibrinogen systems
Lausanne, EPFL, 2004. DOI : 10.5075/epfl-thesis-2946.2003
Journal Articles
Study of probes and substrates for low temperature atomic force microscopy and biological applications
Acta Physica Polonica A. 2003. DOI : 10.12693/APhysPolA.104.373.Coherent fluorescence resonance energy transfer: Construction of nonlocal multiparticle entangled states and quantum computing
Europhysics Letters - European Physical Society Letters (EPL). 2003. DOI : 10.1209/epl/i2003-00472-2.A low-temperature ultrahigh vacuum atomic force microscope for biological applications
Review of Scientific Instruments. 2003. DOI : 10.1063/1.1532840.An application of atomic force microscopy to measure the spring constant of single antigen-antibody complex
Physics of Low-Dimensional Structures. 2003.Anthracycline-dependent heat-induced transition from positive to negative supercoiled DNA
Electrophoresis. 2003. DOI : 10.1002/elps.200305388.Characterization of atomic force microscope probes at low temperatures
Journal of Applied Physics. 2003. DOI : 10.1063/1.1604952.Large fluctuations in the disassembly rate of microtubules revealed by atomic force microscopy
Ultramicroscopy. 2003. DOI : 10.1016/S0304-3991(03)00048-2.Scanning near-field optical microscopy using semiconductor nanocrystals as a local fluorescence and fluorescence resonance energy transfer source
Journal of Microscopy-Oxford. 2003. DOI : 10.1046/j.1365-2818.2003.01143.x.Near-field optical microscopy of strongly scattering microporous metal/polymer membranes
Optics Communications. 2003. DOI : 10.1016/S0030-4018(03)01159-3.Interactions between synaptic vesicle fusion proteins explored by atomic force microscopy
Proceedings Of The National Academy Of Sciences Of The United States Of America (PNAS). 2003. DOI : 10.1073/pnas.1533137100.Vitrification of cryoelectron microscopy specimens revealed by high-speed photographic imaging
Journal of Microscopy-Oxford. 2003. DOI : 10.1046/j.1365-2818.2003.01193.x.Force spectroscopy of polyclonal and monoclonal anti-bovine serum albumin antibodies - BSA complexes
Acta Physica Polonica A. 2003. DOI : 10.12693/APhysPolA.104.321.Low noise current-to-voltage converter and vibration damping system for a low-temperature ultrahigh vacuum scanning tunneling microscope
Review of Scientific Instruments. 2003. DOI : 10.1063/1.1533100.Nonperturbing observation of optical near field
Applied Physics Letters. 2003. DOI : 10.1063/1.1630860.Fast processes imaging device
American Journal of Physics. 2003. DOI : 10.1119/1.1523074.2002
Journal Articles
Simultaneous trapping and guiding of cold ions and electrons without externally applied fields
Optics Communications. 2002. DOI : 10.1016/S0030-4018(02)01811-4.Effect of bacteria growth temperature on the distribution of supercoiled DNA and its thermal stability
Electrophoresis. 2002. DOI : 10.1002/1522-2683(200210)23:19<3300::AID-ELPS3300>3.0.CO;2-Q.AFM study of Pt clusters electrochemically deposited onto boron-doped diamond films
Nano Letters. 2002. DOI : 10.1021/nl015666l.Observation and Modification of the Surface of Some Organic Crystals by Means of Atomic Force Microscopy
Probe Microscopy. 2002. DOI : 10.1080/13551850214944.Atomic force microscopy for imaging and force mapping of plasmodium Berghei sporozoite
Physics of Low-Dimensional Structures. 2002.AFM structural study of the molecular chaperone GroEL and its two-dimensional crystals: an ideal "living" calibration sample
Ultramicroscopy. 2002. DOI : 10.1016/S0304-3991(02)00149-3.Direct measurement of the absolute value of the interaction force between the fiber probe and the sample in a scanning near-field optical microscope
Applied Physics Letters. 2002. DOI : 10.1063/1.1499736.Mechanical properties of high-aspect-ratio atomic-force microscope tips
Applied Physics Letters. 2002. DOI : 10.1063/1.1485307.Local fluorescent probes for the fluorescence resonance energy transfer scanning near-field optical microscopy
Applied Physics Letters. 2002. DOI : 10.1063/1.1467695.2001
Journal Articles
On the possibility of observation of single quadrupoles by fluorescence resonance energy transfer scanning near-field optical microscopy
Optics Communications. 2001. DOI : 10.1016/S0030-4018(00)01154-8.Using magnetic dipole transitions for fluorescence resonance energy transfer
Analytical Biochemistry. 2001. DOI : 10.1006/abio.2001.5430.Analysis of fiber probes of scanning near-field optical microscope by field emission microscopy
Ultramicroscopy. 2001. DOI : 10.1016/S0304-3991(01)00102-4.Single-molecule imaging by atomic force microscopy of the native chaperonin complex of the thermophilic archaeon Sulfolobus solfataricus
Biochemical and Biophysical Research Communications. 2001. DOI : 10.1006/bbrc.2001.5750.Imaging the native structure of the chaperone protein GroEL without fixation using atomic force microscopy
Journal of Microscopy-Oxford. 2001. DOI : 10.1046/j.1365-2818.2001.00891.x.Geometrical and electronic structure of Pd clusters on graphite
Surface Science. 2001. DOI : 10.1016/S0039-6028(00)00945-6.Examination of line crossings by atomic force microscopy
Forensic Science International. 2001. DOI : 10.1016/S0379-0738(00)00458-8.Automatic classification of HITS into artifacts or solid or gaseous emboli by a wavelet representation combined with dual-gate TCD
Stroke. 2001. DOI : 10.1161/hs1201.099714.Localization of breakage points in knotted strings
New Journal of Physics. 2001. DOI : 10.1088/1367-2630/3/1/310.Combined evanescent light-electro static atom trap of subwavelength size
Optics Communications. 2001. DOI : 10.1016/S0030-4018(01)01328-1.2000
Journal Articles
Setup for observing living cells using a commercial atomic force microscope
Review of Scientific Instruments. 2000. DOI : 10.1063/1.1318913.Time-gated scanning near-field optical microscopy
Applied Physics Letters. 2000. DOI : 10.1063/1.1314287.Towards the fluorescence resonance energy transfer (FRET) scanning near-field optical microscopy: Investigation of nanolocal FRET processes and FRET probe microscope
Journal of Experimental and Theoretical Physics. 2000. DOI : 10.1134/1.559161.Fuzzy logic algorithm to extract specific interaction forces from atomic force microscopy data
Review of Scientific Instruments. 2000. DOI : 10.1063/1.1150583.Scanning near-field optical microscopy based on the heterodyne phase-controlled oscillator method
Journal of Applied Physics. 2000. DOI : 10.1063/1.1287234.Impact cratering study performed in the laboratory without a fast recording camera
American Journal of Physics. 2000. DOI : 10.1119/1.19546.Conference Papers
Mechanical properties of individual microtubules measured using atomic force microscopy
2000. 14th International Winter School on Electronic Properties on Novel Materials, KIRCHBERG, AUSTRIA, Mar 04-11, 2000. p. 482 - 486. DOI : 10.1063/1.1342559.1999
Journal Articles
Investigation of nanolocal fluorescence resonance energy transfer for scanning probe microscopy
Applied Physics Letters. 1999. DOI : 10.1063/1.124125.Comment on the paper "Subwavelength diameter of light beams in active waveguides"
Jetp Letters. 1999. DOI : 10.1134/1.568238.Near-field optical excitation as a dipole-dipole energy transfer process
Journal of Microscopy-Oxford. 1999. DOI : 10.1046/j.1365-2818.1999.00498.x.Reviews
Force-distance curves by atomic force microscopy
Surface Science Reports. 1999. DOI : 10.1016/S0167-5729(99)00003-5.1997
Journal Articles
Atomic force and scanning tunneling microscopy study of current-voltage properties of TiB2 microcontacts
Journal of Applied Physics. 1997. DOI : 10.1063/1.365896.1996
Journal Articles
Kinetics of cellular viability in warm versus cold ischemia conditions of kidney preservation - A biometric study
Transplantation. 1996. DOI : 10.1097/00007890-199608150-00020.Elastic deformations of tip and sample during atomic force microscope measurements
Journal of Vacuum Science & Technology B. 1996. DOI : 10.1116/1.588525.AFM measurements of the topography and the roughness of ECR plasma treated polypropylene
Applied Surface Science. 1996. DOI : 10.1016/0169-4332(96)00461-8.1995
Journal Articles
Creation of a Conductive Surface-Layer on Polypropylene Samples by Low-Pressure Plasma Treatments
Journal of Applied Physics. 1995. DOI : 10.1063/1.359211.Interaction of Low-Energy Ions (Less-Than-10 Ev) with Polymethylmethacrylate During Plasma Treatment
Applied Surface Science. 1995. DOI : 10.1016/0169-4332(95)00013-5.Nucleation and growth of gold on polypyrrole investigated by quantitative XPS and STM
Thin Solid Films. 1995. DOI : 10.1016/0040-6090(95)06827-9.Mapping the Local Youngs Modulus by Analysis of the Elastic Deformations Occurring in Atomic-Force Microscopy
Nanotechnology. 1995. DOI : 10.1088/0957-4484/6/1/003.Book Chapters
The Fractal Structure of Materials and Surfaces
Fractals in Geoscience and Remote Sensing; Luxembourg: European Comission, 1995. p. 325 - 341.1994
Journal Articles
An Investigation of Doped Polypyrrole by a Combination of Scanning Tunneling and Atomic-Force Microscopes
Synthetic Metals. 1994. DOI : 10.1016/0379-6779(94)90043-4.Energy-Dissipation During Nanoscale Indentation of Polymers with an Atomic-Force Microscope
Applied Physics Letters. 1994. DOI : 10.1063/1.112003.New Aspects in Volmer-Weber 3d Growth - an Xps Intensity Study Applied to Thin-Films of Au and Ce on Polypropylene
Surface Science. 1994. DOI : 10.1016/0039-6028(94)90209-7.Plasma Modification of Polymethylmethacrylate and Polyethyleneterephthalate Surfaces
Journal of Applied Physics. 1994. DOI : 10.1063/1.357765.The Role of Plasma Ion in Pmma and Pet Surface Modification During Ecr Plasma Treatment
Vide-Science Technique Et Applications. 1994.Aspects of the Surface-Roughness of Ceramic Bonding Tools on a Nanometer-Scale Investigated with Atomic-Force Microscopy
Thin Solid Films. 1994. DOI : 10.1016/0040-6090(94)90339-5.1993
Journal Articles
X-Ray Photoelectron-Spectroscopy Study of the Polypropylene Magnesium Interface after Insitu Plasma and Ion Treatment - Sticking, Bonding, and Film Growth
Journal of Vacuum Science & Technology a : Vacuum Surfaces and Films. 1993. DOI : 10.1116/1.578760.X-Ray Photoelectron-Spectroscopy Study of Growth of Thin Cerium Films on Polypropylene
Journal of Vacuum Science & Technology a : Vacuum Surfaces and Films. 1993. DOI : 10.1116/1.578630.Polymer-Metal Interface Formation and Film Growth on Plasma and Ion-Treated Polymer Surfaces
Surface and Interface Analysis. 1993. DOI : 10.1002/sia.740200514.1992
Journal Articles
Fractal Aspects of the Swiss Landscape
Physica A. 1992. DOI : 10.1016/0378-4371(92)90530-4.Electron-Cyclotron Resonance Plasma-Experiment for Insitu Surface Modification, Deposition, and Analysis
Journal of Vacuum Science & Technology a : Vacuum Surfaces and Films. 1992. DOI : 10.1116/1.577795.1991
Journal Articles
Effects of Polymer Surface-Treatment on Metal Polymer Interfaces Studied by X-Ray Photoelectron-Spectroscopy
Surface and Interface Analysis. 1991. DOI : 10.1002/sia.740170724.1988
Journal Articles
Observation of 3d-Ising Exponents in Micellar Solutions
Physical Review Letters. 1988. DOI : 10.1103/PhysRevLett.60.1852.1987
Journal Articles
The Influence of Calcium-Ions on Fibrin Polymerization
Biopolymers. 1987. DOI : 10.1002/bip.360260107.Gelation of Colloidal Silica - Reply
Physical Review Letters. 1987. DOI : 10.1103/PhysRevLett.59.246.1986
Journal Articles
Experimental Tests of a Geometrical Abstraction of Fibrin Polymerization
Biopolymers. 1986. DOI : 10.1002/bip.360250511.Gelation of Colloidal Silica
Physical Review Letters. 1986. DOI : 10.1103/PhysRevLett.57.3117.A Simple-Model of Fibrinpolymerization
Schweizerische Medizinische Wochenschrift. 1986.1985
Journal Articles
Experiments on Blood-Coagulation
Journal of Statistical Physics. 1985.Temperature-Dependence of Fibrin Polymerization - a Light-Scattering Study
Biochemistry. 1985. DOI : 10.1021/bi00344a060.1984
Journal Articles
Temperature-Dependence of the Fibrinogen-Fibrin Aggregation - a Temperature-Dependent Process in the Human-Body
Helvetica Physica Acta. 1984.1982
Journal Articles
On the Way to a Model for Fibrinogen-Fibrin Aggregation
Helvetica Physica Acta. 1982.Fibrin Aggregation before Sol-Gel Transition
Biophysical Journal. 1982. DOI : 10.1016/S0006-3495(82)84539-6.Investigation of Fibrinogen-Fibrin Aggregation with the Aid of Light-Scattering as a Function of the Split-Off Fibrinopeptides-A
Helvetica Physica Acta. 1982.Fibrin Polymerization Studied by Static and Dynamic Light-Scattering as a Function of Fibrinopeptide a Release
Biopolymers. 1982. DOI : 10.1002/bip.360211109.1981
Journal Articles
The Aggregation of Fibrin before the Sol-Gel Change
Helvetica Physica Acta. 1981.The Pre-Gelation Phase of Fibrin Aggregation
Thrombosis and Haemostasis. 1981. DOI : 10.1055/s-0038-1653067.Teaching & PhD
Past EPFL PhD Students
Lilia Chtcheglova, Mélanie Favre, Erika Ercolini, Susana del Carmen Tobenas Borron, Mounir Driss Mensi, Guillaume Witz, Kanat Dukenbayev, Livan Bladimir Alonso Sarduy, Jae Sun Jeong, Fabrizio Benedetti, Andrea Cerreta, Andrey Mikhaylov, Aleksandre Japaridze, Francesco Simone Ruggeri, Ekaterina Rostova, Petar Stupar, Wojciech Chomicki, Anton Smirnov, Jiangtao Zhou