Marwan Abdellah

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System specialist

marwan.abdellah@epfl.ch +41 21 693 17 31 http://marwan-abdellah.com

Citizenship: Egyptian

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Google Scholar ID

Senior Visualization Research Engineer

EPFL BBP-CORE
Campus Biotech
Bâtiment B1
Ch. des Mines 9
1202 Genève

+41 21 693 17 31
Office: B1 4 258.040
EPFL > VPA-AVP-CP > BBP > BBP-CORE

Web site: Web site: https://www.epfl.ch/research/domains/bluebrain/

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Administrative data

Fields of expertise

Visualization
Physically-based Rendering (PBR)
High Performance Computing (HPC)
High Fidelity Mesh Reconstruction
In silico Neuronscience

Education

Ph.D. (Docteur ès Sciences)

Neurosciences

EPFL

09.2017

M.Sc.

Biomedical Engineering

Cairo University

02.2012

B.Sc.

Biomedical Engineering

Cairo University

07.2009

Publications

Selected publications

Stefan Eilemann, Marwan Abdellah, Nicolas Antille, Ahmet Bilgili, Grigory Chevtchenko, Raphael Dumusc, Cyrille Favreau, Juan Hernando, Daniel Nachbaur, Pawel Podhajski, Jafet Villafranca, Felix Schürmann International Conference on High Performance Computing, Springer, Cham, 2017	From Big Data to Big Displays High-Performance Visualization at Blue Brain
Marwan Abdellah, Ahmet Bilgili, Stefan Eilemann, Henry Markram, Felix Schürmann arXiv preprint arXiv:1706.03024	A Physically Plausible Model for Rendering Highly Scattering Fluorescent Participating Media
Marwan Abdellah, Ahmet Bilgili, Stefan Eilemann, Julian Shillcock, Henry Markram, Felix Schürmann BMC Bioinformatics 2017	Bio-physically plausible visualization of highly scattering fluorescent neocortical models for in silico experimentation
Marwan Abdellah, Juan Hernando, Nicolas Antille, Stefan Eilemann, Henry Markram, Felix Schurmann BMC Bioinformatics 2017	Reconstruction and visualization of large-scale volumetric models of neocortical circuits for physically-plausible in silico optical studies
Marwan Abdellah, Asem Abdelaziz, Eslam Ali, Sherief Abdelaziz, Abdelrahman Sayed, Mohamed I Owis, Ayman Eldeib Engineering in Medicine and Biology Society (EMBC), 2016 IEEE 38th Annual International Conference of the	Parallel generation of digitally reconstructed radiographs on heterogeneous multi-GPU workstations
Marwan Abdellah, Mohamed Abdallah, Mohamed Alzanati, Ayman Eldeib Engineering in Medicine and Biology Society (EMBC), 2016 IEEE 38th Annual International Conference of the	Efficient rendering of digitally reconstructed radiographs on heterogeneous computing architectures using central slice theorem
Marwan Abdellah, Ahmet Bilgili, Stefan Eilemann, Henry Markram, Felix Schürmann Proceedings of the 37th Annual Conference of the European Association for Computer Graphics: Posters	Physically-based rendering of highly scattering fluorescent solutions using path tracing
Marwan Abdellah, Asem Abdelaziz, Ayman Eldeib 2016 IEEE 13th International Symposium on Biomedical Imaging (ISBI)	Interactive high resolution reconstruction of 3D ultrasound volumes on the GPU
Marwan Abdellah, Yassin Amer, Ayman Eldeib XIV Mediterranean Conference on Medical and Biological Engineering and Computing	Optimized GPU-accelerated framework for x-ray rendering using k-space volume reconstruction
Henry Markram, Eilif Muller, Srikanth Ramaswamy, Michael W Reimann, Marwan Abdellah, Carlos Aguado Sanchez, Anastasia Ailamaki, Lidia Alonso-Nanclares, Nicolas Antille, Selim Arsever, Guy Antoine Atenekeng Kahou, Thomas K Berger, Ahmet Bilgili, Nenad Buncic, Athanassia Chalimourda, Giuseppe Chindemi, Jean-Denis Courcol, Fabien Delalondre, Vincent Delattre, Shaul Druckmann, Raphael Dumusc, James Dynes, Stefan Eilemann, Eyal Gal, Michael Emiel Gevaert, Jean-Pierre Ghobril, Albert Gidon, Joe W Graham, Anirudh Gupta, Valentin Haenel, Etay Hay, Thomas Heinis, Juan B Hernando, Michael Hines, Lida Kanari, Daniel Keller, John Kenyon, Georges Khazen, Yihwa Kim, James G King, Zoltan Kisvarday, Pramod Kumbhar, Sébastien Lasserre, Jean-Vincent Le Bé, Bruno RC Magalhães, Angel Merchán-Pérez, Julie Meystre, Benjamin Roy Morrice, Jeffrey Muller, Alberto Muñoz-Céspedes, Shruti Muralidhar, Keerthan Muthurasa, Daniel Nachbaur, Taylor H Newton, Max Nolte, Aleksandr Ovcharenko, Juan Palacios, Luis Pastor, Rodrigo Perin, Rajnish Ranjan, Imad Riachi, José-Rodrigo Rodríguez, Juan Luis Riquelme, Christian Rössert, Konstantinos Sfyrakis, Ying Shi, Julian C Shillcock, Gilad Silberberg, Ricardo Silva, Farhan Tauheed, Martin Telefont, Maria Toledo-Rodriguez, Thomas Tränkler, Werner Van Geit, Jafet Villafranca Díaz, Richard Walker, Yun Wang, Stefano M Zaninetta, Javier DeFelipe, Sean L Hill, Idan Segev, Felix Schürmann Cell 2015	Reconstruction and simulation of neocortical microcircuitry
Marwan Abdellah, Ayman Eldeib, Mohamed I Owis Engineering in Medicine and Biology Society (EMBC), 2015 37th Annual International Conference of the IEEE	GPU acceleration for digitally reconstructed radiographs using bindless texture objects and CUDA/OpenGL interoperability
Marwan Abdellah, Ayman Eldeib, Mohamed I Owis Engineering in Medicine and Biology Society (EMBC), 2015 37th Annual International Conference of the IEEE	Accelerating DRR generation using Fourier slice theorem on the GPU
Marwan Abdellah, Ahmet Bilgili, Stefan Eilemann, Henry Markram, Felix Schürmann BMC Bioinformatics 2015	Physically-based in silico light sheet microscopy for visualizing fluorescent brain models
Marwan Abdellah, Ahmet Bilgili, Stefan Eilemann, Henry Markram, Felix Schürmann The European Association for Computer Graphics (Eurographics) 2015	A Computational Model of Light-Sheet Fluorescence Microscopy using Physically-based Rendering
Marwan Abdellah, Rolf Gruetter 2015	Computational Models and Simulators of functional MRI
Srikanth Ramaswamy, Jean-Denis Courcol, Marwan Abdellah, Stanislaw R Adaszewski, Nicolas Antille, Selim Arsever, Guy Atenekeng, Ahmet Bilgili, Yury Brukau, Athanassia Chalimourda, Giuseppe Chindemi, Fabien Delalondre, Raphael Dumusc, Stefan Eilemann, Michael Emiel Gevaert, Padraig Gleeson, Joe W Graham, Juan B Hernando, Lida Kanari, Yury Katkov, Daniel Keller, James G King, Rajnish Ranjan, Michael W Reimann, Christian Rössert, Ying Shi, Julian C Shillcock, Martin Telefont, Werner Van Geit, Jafet Villafranca Diaz, Richard Walker, Yun Wang, Stefano M Zaninetta, Javier DeFelipe, Sean L Hill, Jeffrey Muller, Idan Segev, Felix Schürmann, Eilif B Muller, Henry Markram Frontiers in neural circuits, Volume 9, 2015	The neocortical microcircuit collaboration portal: a resource for rat somatosensory cortex
Marwan Abdellah, Ayman Eldeib, Amr Sharawi International Journal of Biomedical Imaging, 2015	High Performance GPU-based Fourier Volume Rendering
Marwan Abdellah, Ayman Eldeib, Amr Sharawi Biomedical Engineering Conference (CIBEC), 2014 Cairo International	Matlab-based Fourier volume rendering framework
Marwan Abdellah, Ayman Eldeib, Amr Sharawi Biomedical Engineering Conference (CIBEC), 2014 Cairo International	Offline Large Scale Fourier Volume Rendering on Low-end Hardware
Marwan Abdellah Proceedings of the High Performance Computing Symposium, Society for Computer Simulation International	cufftShift: High Performance CUDA-accelerated FFT-Shift Library
Marwan Abdellah, Saleh Saleh, Ayman Eldeib, Amr Shaarawi Biomedical Engineering Conference (CIBEC), 2012 Cairo International	High Performance Multi-dimensional (2D/3D) FFT-Shift Implementation on Graphics Processing Units (GPUs)
Salah Saleh, Marwan Abdellah, Ahmed A Abdel Raouf, Yasser M Kadah Biomedical Engineering Conference (CIBEC), 2012 Cairo International	High performance cuda-based implementation for the 2d version of the maximum subarray problem (msp)
Marwan Abdellah M.Sc. Thesis, Cairo University, 2012	High performance Fourier volume rendering on graphics processing units
Marwan Abdellah, Ayman Eldeib, Amr Shaarawi Biomedical Engineering Conference (CIBEC), 2012 Cairo International. IEEE	Constructing a Functional Fourier Volume Rendering Pipeline on Heterogeneous Platforms
Stefan Eilemann, Ahmet Bilgili, Marwan Abdellah, Juan Hernando, Maxim Makhinya, Renato Pajarola, Felix Schürmann Eurographics Symposium on Parallel Graphics and Visualization	Parallel rendering on hybrid multi-gpu clusters
Ahmed F Elnokrashy, Ahmed A Elmalky, Tamer M Hosny, Marwan Abd Ellah, Alaa Megawer, Abobakr Elsebai, Abou-Bakr M Youssef, Yasser M Kadah Ultrasonics Symposium (IUS), 2009 IEEE International	GPU-based reconstruction and display for 4D ultrasound data
Marwan M Abd Ellah, Megawer Alaa'A, Yasser M Kadah Radio Science Conference, 2009. NRSC 2009. National	Software development for low cost, high quality, real-time 4D ultrasound imaging system on personal computers (PCs)