Romain Guiet

AI 0140 (Bâtiment AI)
Station 15
1015 Lausanne

Web site:  Web site:

Administrative data

Fields of expertise

  • Development of BioImage Analysis workflows and algorithms to extract quantitative data from microscopy images.
  • BioSample Preparation : in vitro cell, organoid, time-lapse, fixation, staining strategies, actin, mitochondria, fluorescent protein expression
  • BioImage Acquisition : Widefield, Confocal, Whole Slide Imaging, Super-resolution (SIM, STORM, STED), FRET, FRAP, FLIM
  • BioImage Analysis: Co-localization analysis, Deconvolution, Time-lapse , Whole Slide Imaging
  • Tools & Software: ImageJ/Fiji, QuPath, ilastik CellProfiler, Imaris, Arivis, Matlab, Rstudio, Jupyter Notebooks, Renku
  • Programming languages: ImageJ macro language, Groovy, Java, Python, (R, Matlab)


Selected publications

Teaching & PhD

Mooc : Image Processing and Analysis for Life Scie

MOOC on courseware


Image Processing for Life Science

Registration details will be announced via email. It takes place from September to December & intends to teach image processing with a strong emphasis of applications in life sciences. The idea is to enable the participants to solve image processing questions via workflows independently.