Stéphane Joost
EPFL ENAC SSIE-GE
GC D2 398 (Bâtiment GC)
Station 18
CH-1015 Lausanne
EPFL ENAC IIE LASIG
GC D2 398 (Bâtiment GC)
Station 18
CH-1015 Lausanne
Projects
- METASANTE (NCCR LIVES, UNIL, UNISANTE, VILLE de LAUSANNE)
- Local Adaptation of freshwater bacteria Communities (ENAC)
- Impact of climate and land planning on the occurrence of hepatitis E virus (ENAC)
- GEOSAN (ETAT VD)
- GEOSMOKE (FPT OFSP)
- SAFE (FHW Geneva)
- IMAGE (EU H2020)
- GENMON (BLW)
- ADAPTMAP
- CLIMGEN (ERANET)
- GREENTRACE (CROSS)
- URBANGENE (ETAT GE)
- GENESCALE (SNF)
- NEXTGEN (EU FP7)
- GENOMIC RESOURCES (ESF RNP)
- SAVMAP (CODEV)
- PIGDIV (CODEV)
- MESSAGE (SATW)
- GLOBALDIV (EU)
- ECONOGENE (EU FP5)
Ph.D. Thesis
Media
Capsule NOUVO: écologie moléculaire des papillons en milieu urbain - Rochat et al. (2017) Heredity [NOUVO RTS, le 22.8.2017]
Comment les vaches s'adapteront-elles au changement climatique? [RTS Intercités, Journal du matin, le 3.5.2017]
Why do we need traditional livestock breeds adapted to their local environment? SwissInfo.ch [16.12.2015]
Awards
- Winner of the AAGs first William L. Garrison Award for best dissertation in computational geography
(AAG website) Garrison Award
Commissions and boards
Member of the Commission on Geovisualization of the International Cartographic Association (ICA, http://geoanalytics.net/ica/)
Secretary General of the Geographic Information Technology Training Alliance steering committee (GITTA)
Researcher ID
Mission
I specialized in the contribution of Geographic Information Science approaches for the analysis and for the management of genetic and health data. Within a small landscape genetics research group at the Laboratory of Geographic Information Systems (LASIG), I apply spatial analysis, spatial statistics, spatial modelling, and geocomputational methods to evolutionary biology and health data. I also make use of environmental engineering monitoring tools (e.g. meteorological stations, airborne sensors) to enhance the quality and the spatial resolution of geo-environmental data used in landscape genomics models.
GIScience : Spatial analysis, Spatial statistics, Geocomputation, Exploratory spatial data analysis
Spatial analysis of genetic (Landscape Genetics, Landscape Genomics, Conservation genetics) and health data (see GIRAPH group)
I currently serve on the editorial boards of BMC Genetics (associate editor), Frontiers in Genetics (associate editor), Frontiers in Ecology and Evolution (review editor), Frontiers in Environmental Informatics (review editor) and of the International Journal of Geomatics and Spatial Analysis (Revue Internationale de Géomatique). I also serve on the standing committee of the Association of American Geographers (AAG) for the attribution of the William L. Garrison award for best dissertation in computational geography.
GIScience : Spatial analysis, Spatial statistics, Geocomputation, Exploratory spatial data analysis
Spatial analysis of genetic (Landscape Genetics, Landscape Genomics, Conservation genetics) and health data (see GIRAPH group)
I currently serve on the editorial boards of BMC Genetics (associate editor), Frontiers in Genetics (associate editor), Frontiers in Ecology and Evolution (review editor), Frontiers in Environmental Informatics (review editor) and of the International Journal of Geomatics and Spatial Analysis (Revue Internationale de Géomatique). I also serve on the standing committee of the Association of American Geographers (AAG) for the attribution of the William L. Garrison award for best dissertation in computational geography.
Biography
2012 Co-founder Geographic Information Research and Analysis in Public Health (GIRAPH)
2008 Co-founder MicroGIS Foundation for Spatial Analysis (MFSA)
1996 Co-founder MicroGIS SA
2008 Co-founder MicroGIS Foundation for Spatial Analysis (MFSA)
1996 Co-founder MicroGIS SA
Liens
MOOCs recorded
Fields of expertise
Geographic Information Science - Landscape genomics - Seascape genomics - Spatial epidemiology - Geomedicine & Precision population health
Publications
Infoscience
References
. Population density and water balance influence the global occurrence of hepatitis E epidemics, in Scientific Reports, vol. 9, num. 10042, p. 1-10, 2019-07-11.
. Neighbourhood socioeconomic deprivation and allostatic load: a multi-cohort study, in Scientific Reports, vol. 9, num. 8790, p. 1-11, 2019-06-19.
. Rapid identification and interpretation of gene‐environment associations using the new R.SamBada landscape genomics pipeline, in Molecular Ecology Resources, vol. ahead of print, 2019-06-01.
. Addressing Urban Sprawl from the Complexity Sciences, in Urban Science, vol. 3, num. 2, p. 60, 2019-06-01.
. Indication of spatially random occurrence of Chlamydia-like organisms in Bufo bufo tadpoles from ponds located in the Geneva metropolitan area, in New Microbes and New Infections, vol. 27, p. 54-63, 2019-01-31.
. Genome-wide variation in nucleotides and retrotransposons in alpine populations of Arabis alpina (Brassicaceae), in Molecular Ecology Resources, vol. 19, num. 3, p. 773-787, 2019-01-13.
. Landscape Genomics: Understanding Relationships Between Environmental Heterogeneity and Genomic Characteristics of Populations, in Population Genomics: Concepts, Strategies, and Applications, p. 261-322Springer, Cham, 2019.
. Genome-wide SNP profiling of worldwide goat populations reveals strong partitioning of diversity and highlights post-domestication migration routes, in Genetics Selection Evolution, vol. 50, p. 58BMC, London, 2018.
. Signatures of selection and environmental adaptation across the goat genome post-domestication, in Genetics Selection Evolution, vol. 50, p. 57BMC, London, 2018.
. AdaptMap: exploring goat diversity and adaptation, in Genetics Selection Evolution, vol. 50, p. 61BMC, London, 2018.
. The impact of a public smoking ban on smoking socioeconomic inequalities in a Swiss urban population, in European Journal Of Public Health, vol. 28, p. 138-138OXFORD UNIV PRESS, Oxford, 2018.
. Spatial distribution of mammography adherence in a Swiss urban population and its association with socioeconomic status, in Cancer Medicine, vol. 7, num. 12, p. 6299-6307, 2018-10-25.
. Combining Landscape Genomics and Ecological Modelling to Investigate Local Adaptation of Indigenous Ugandan Cattle to East Coast Fever, in Frontiers in Genetics, vol. 9, num. 385, p. 1-16, 2018-10-03.
. Crystal structure evaluation: calculating relative stabilities and other criteria: general discussion, in Faraday Discussions, vol. 211, p. 325-381, 2018-10-01.
. Developing Attitude Measures Based on Respondents’ Representations of Unfamiliar Objects, in Field Methods, p. 1525822X1879728, 2018-09-03.
. Spatial distribution of mammography adherence in a Swiss urban population and its association with socioeconomic status, in BioRxiv preprint, p. 404673, 2018-08-31.
. Indication of spatially random infection of chlamydia-like organisms in Bufo bufo tadpoles from ponds located in the Geneva metropolitan area, submitted in BioRxiv preprint, p. 402487, 2018-08-30.
. Detecting overlapping spatial clusters of high sugar-sweetened beverage intake and high body mass index in a general population: a cross-sectional study, submitted in BioRxiv preprint, p. 2018/08/29/399584, 2018-08-29.
. The Least Cost Path From Landscape Genetics to Landscape Genomics: Challenges and Opportunities to Explore NGS Data in a Spatially Explicit Context, in Frontiers in Genetics, vol. 9, p. 1-4, 2018-06-19.
. Spatial clusters of daytime sleepiness and association with nighttime noise levels in a Swiss general population (GeoHypnoLaus), in International Journal of Hygiene and Environmental Health, p. 1-7, 2018-06-04.
. NTIRE 2018 Challenge on Spectral Reconstruction from RGB Images. IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR), Salt Lake City, UT, 2018.
. Population density and water balance influence the global occurrence of hepatitis E epidemics. 16th Annual Ecology and Evolution of Infection Diseases - EEID, Glasgow, Scotland, 2018.
. NTIRE 2018 Challenge on Spectral Reconstruction from RGB Images. IEEE Conference on Computer Vision and Pattern Recognition Workshops 2018, Salt Lake City, USA, 2018.
. Switchable Light Reflectance in Dilute Magneto-Optical Colloids Based on Nickel Ferrite Nanowires, in E-JOURNAL OF SURFACE SCIENCE AND NANOTECHNOLOGY, vol. 16, p. 119-121, 2018.
. Combining landscape genomics and ecological modelling to investigate local adaptation of indigenous Ugandan cattle to East Coast fever, in BioRxiv, p. 1-52, 2018.
. Convergent genomic signatures of domestication in sheep and goats, in Nature Communications, vol. 9:813, num. 1, 2018.
. Some unexpected facets of open access geodata publishing. Noon Talks EPFL Library, Lausanne, Switzerland, 2018.
. Effets de l'environnement urbain sur la santé: l’importance des données géoréférencées au lieu de résidence en géomédecine. 19e Conférence nationale sur la promotion de la santé et 4e Conférence des parties prenantes MNT - Promotion Santé Suisse, Eventfabrik, Berne, 2018.
. Public smoking ban and socioeconomic inequalities in smoking prevalence and cessation: a cross-sectional population-based study in Geneva, Switzerland (1995–2014), in Tobacco Control, vol. 27, num. 6, p. 663-669, 2018.
. Multiscale landscape genomic models to detect signatures of selection in the alpine plant Biscutella laevigata, in Ecology and Evolution, vol. 8, p. 1794-1806, 2018.
. Healthy Urban Planning: Body Mass Index association with exposure to night-time noise in the canton of Geneva. GeoMed, Porto, 2017-09-07.
. Modeling the present and future distribution of waterborne Hepatitis E virus. IECID 2017 Impact of Environmental Change on Infectious Diseases, Trieste, Italy, 2017-05-17.
. Des médecins à la direction de l’urbanisme ?. Forum Bâtir et Planifier "Villes en pleine santé", Lausanne, EPFL, Switzerland, 2017.
. Données médicales et génétiques géoréférencées au lieu de résidence pour un service de santé publique de précision. Swiss Public Health Conference 2017, Basel, Switzerland, 2017.
. Systèmes d'Information Géographique 2. Presses Polytechniques et Universitaires Romandes (PPUR), Lausanne, 2017.
. Systèmes d'Information Géographique 1. Presses Polytechniques et Universitaires Romandes (PPUR), Lausanne, 2017.
. Spatial dependence of body mass index and exposure to night-time noise in the Geneva urban area. X international, interdisciplinary conference on spatial statistics, geographical epidemiology and geographical aspects of public health, Porto, Portugal, 2017.
. Open science practices in geospatial education and research. Open Science in Practice Summer School (OSIP2017), EPFL, Lausanne, Switzerland, 2017.
. Landscape genomic approach to detect selection signatures in locally adapted Brazilian swine genetic groups, in Ecology and Evolution, vol. 7, num. 22, p. 9544-9556, 2017.
. Current challenge in landscape genomics: what about the environmental counterpart of high-throughput genomic data?. ESEB XVI Congress, Groningen, NL, 2017.
. Detecting animals in African Savanna with UAVs and the crowds, in Remote Sensing of Environment -New York-, vol. 200, p. 341-351Elsevier, New York, 2017.
. First quantitative survey delineates the distribution of chimpanzees in the Eastern Central African Republic, in Biological Conservation, vol. 213, p. 84-94Elsevier, Oxford, 2017.
. Integration of the role of climate in the spatial modeling of waterborne hepatitis E virus. Impact of Environmental Changes on Infectious Diseases, International Centre for Theoretical Physics, Trieste, Italy, 2017.
. Spatial dependence of genetic data related to human health and livestock disease resistance: a role for geography to support the One Health approach, in International Journal of Health, Animal science and Food safety, vol. 4, num. 1S, 2017.
. Persistence of butterfly populations in fragmented habitats along urban density gradients: motility helps, in Heredity -London-, vol. 119, p. 328-338Nature Publishing Group, London, 2017.
. Geomedicine: opportunities of using spatial information to move toward more precision in public health - Using geomedicine to identify BMI clusters in Geneva and Lausanne. 2ème congrès de printemps de la Société Suisse de Médecine Interne Générale, Lausanne, Swisstech Convention Center, 2017.
. Geomedicine: opportunities of using spatial information to move toward more precision in public health - spatial approaches and clusters: an introduction for clinicians. 2ème congrès de printemps de la Société Suisse de Médecine Interne Générale, Lausanne, Swisstech Convention Center, 2017.
. A WebGIS platform for the monitoring of Farm Animal Genetic Resources (GENMON), in Plos One, vol. 12, num. 4, p. e0176362Public Library of Science, San Francisco, 2017.
. Simple rules for an efficient use of Geographic Information Systems in molecular ecology, in Frontiers in Ecology and Evolution, vol. 5, p. 33, 2017.
. GenMon-CH : a Web-GIS application for the monitoring of Farm Animal Genetic Resources (FAnGR) in Switzerland. SVT-Tagung 2017 - Swiss Association for Animal Science, Zollikofen, Switzerland, 2017.
. Spatial clustering for district heating integration in urban energy systems: application to geothermal energy, in Applied Energy, num. 15 March 2017, p. 749-763, 2017.
. Spatial variability of potassium in agricultural soils of the canton of Fribourg, Switzerland, in Geoderma, vol. 290, p. 107-121Elsevier, Amsterdam, 2017.
. High performance computation of landscape genomic models including local indicators of spatial association, in Molecular Ecology Resources, vol. 17, num. 5, p. 1072-1089Wiley-Blackwell, Hoboken, 2017.
. Gene-obesogenic environment interactions in the UK Biobank study, in International Journal of Epidemiology, vol. 46, num. 2, p. 559-575Oxford University Press, Oxford, 2017.
. Combining genotype, phenotype and environment to infer potential candidate genes: An example using the Loblolly pine (Pinus taeda), in Journal of HeredityOxford University Press, Cary, 2017.
. Single-Cell Transcriptomics Reveals that Differentiation and Spatial Signatures Shape Epidermal and Hair Follicle Heterogeneity, in Cell Systems, vol. 3, num. 3, p. 221-237.e9, 2016-09-28.
. A GIS application to conservation genomics. IDYST Seminars, Faculty of Geosciences and Environment, University of Lausanne, UNIL, Lausanne, Switzerland, 2016.
. Approches spatiales pour une santé publique de précision en milieu urbain. Coloques du Service de la santé publique du canton de Vaud (SSP), Lausanne, Switzerland, 2016.
. Dissolution dynamic nuclear polarization of deuterated molecules enhanced by cross-polarization, in Journal Of Chemical Physics, vol. 145, num. 19, p. 194203Amer Inst Physics, Melville, 2016.
. Selective Trapping of DNA Using Glass Microcapillaries, in Langmuir, vol. 32, num. 33, p. 8525-8532American Chemical Society, Washington, 2016.
. Evidence that low socioeconomic position accentuates genetic susceptibility to obesity, in bioRxiv, 2016.
. A role for HOX13 proteins in the regulatory switch between TADs at the HoxD locus, in Genes & Development, vol. 30, num. 10, p. 1172-1186Cold Spring Harbor Laboratory Press, Cold Spring Harbor, 2016.
. Combining Human Computing and Machine Learning to Make Sense of Big (Aerial) Data for Disaster Response, in Big data, vol. 4, num. 1, p. 47-59Mary Ann Liebert, Inc, New Rochelle, 2016.
. Open computational landscape genetics. Open Source Geospatial Research & Education Symposium 2016, Perugia, Italy, 2016.
. Advances in farm animal genomic resources. Frontiers, Lausanne, 2016.
. Spatial Areas of Genotype Probability of Cattle Genomic Variants Involved in the Resistance to East Coast Fever: A Tool to Predict Future Disease-Vulnerable Geographical Regions. Plant & Animal Genome Conference XXIV, San Diego, California, USA, 2016.
. Persistent spatial clusters of high body mass index in a Swiss urban population as revealed by the 5-year GeoCoLaus longitudinal study, in British Medical Journal Open, num. 6, p. e010145Bmj Publishing Group, London, 2016.
. Detecting spatial genetic signatures of local adaptation in heterogeneous landscapes, in Molecular Ecology, vol. 25, num. 1, p. 104-120Wiley-Blackwell, Hoboken, 2016.
. Multi locus genotypic data reveal high genetic diversity and low genetic structure of Iranian sheep, in Animal Genetics, vol. 47, num. 4, p. 463-470Wiley-Blackwell, Hoboken, 2016.
. The Visual Object Tracking VOT2014 Challenge Results. 13th European Conference on Computer Vision (ECCV), Zurich, SWITZERLAND, 2015.
. Chondroitinase gene therapy improves upper limb function following cervical contusion injury, in Experimental Neurology, vol. 271, p. 131-135Elsevier, San Diego, 2015.
. Advances in farm animal genomic resources, in Frontiers in Genetics, vol. 6, p. 333, 2015.
. Very high-resolution digital elevation models for multi-scale analysis in landscape genomics (GENESCALE). Rechalp Symposium, University of Lausanne, 2015.
. Effect of climate change on the spatial distribution of genomic variants involved in the resistance to East Coast Fever in Ugandan cattle. 19th Evolutionary Biology Meeting, Marseilles, France, 2015.
. Whole genome duplications and recruitment of ecologically relevant genes in alpine Mustards. XVth ESEB Meeting, Lausanne, 2015.
. Prospects and Challenges for the Conservation of Farm Animal Genomic Resources, 2015-2025, in Frontiers in Genetics, vol. 6, p. 314, 2015.
. Very high resolution digital elevation models: are multi-scale derived variables ecologically relevant?, in Methods in ecology and evolution, vol. 6, num. 12, p. 1373-1383Wiley-Blackwell, Hoboken, 2015.
. Genomic diversity and Population Structure of Ugandan Taurine and Zebuine Cattle Breeds. XXI ASPA Congress, Milan, 2015.
. Modeling the spatial distribution of Theileria parva (Theiler 1904), causative agent of East Coast Fever disease in cattle. XXI ASPA Congress, Milan, 2015.
. Relationship between land cover type and Body Mass Index in Geneva. Joint Urban Remote Sensing Event, Lausanne, 2015.
. Characterizing neutral genomic diversity and selection signatures in indigenous populations of Moroccan goats (Capra hircus) using WGS data, in Frontiers in Genetics, 2015.
. Genomic diversity and disease prevalence in Ugandan cattle. Recolad Workshop, Paris, 2015.
. Biodiversity dynamics and the effect of urban environment on the distribution of genetic variation in the Geneva cross-border area. First Annual Meeting in Conservation Genetics – Science and Practice, Birmensdorf, Switzerland, 2015.
. Impact of the urbanization process on connectivity and genetic diversity - a spatially explicit simulation approach. First Annual Meeting in Conservation Genetics – Science and Practice, Birmensdorf, Switzerland, 2015.
. Sustained Delivery of Insulin-Like Growth Factor-1/Hepatocyte Growth Factor Stimulates Endogenous Cardiac Repair in the Chronic Infarcted Pig Heart, in Journal of Cardiovascular Translational Research, vol. 7, num. 2, p. 232-241, 2014.
. Method for hyperpolarization transfer in the liquid state, EP2904414, 2014.
. Adaptations to Climate-Mediated Selective Pressures in Sheep, in Molecular Biology And Evolution, vol. 31, num. 12, p. 3324-3343Oxford Univ Press, Oxford, 2014.
. Biogeoinformatics. Meetings del Comitato Italo-Svizzero per la Geoinformatica, Como, 2014.
. Subsampling as an economic consequence of using whole genome sequence data in landscape genomics: how to maximize environmental information from a reduced number of locations?. Livestock Genomic Resources in a Changing World, Cardiff, UK, 2014.
. Riding the whole-genome data tsunami: a landscape genomic study of local adaptation in Moroccan sheep and goats. Livestock Genomic Resources in a Changing World, Cardiff, UK, 2014.
. Data integration, GIS and multi-criteria decision making for the monitoring of livestock genomic resources. Livestock Genomic Resources in a Changing World, Cardiff, UK, 2014.
. Biogeoinformatics of livestock genomic resources. Livestock genomic resources in a changing world, Cardiff, UK, 2014.
. Microclimatological consequences for plant and microbial composition in Sphagnum-dominated peatlands, in Boreal Environment Research, vol. 19, num. 3, p. 195-208Finnish Environment Inst, Helsinki, 2014.
. The characterization of goat genetic diversity: Towards a genomic approach, in Small Ruminant Research, vol. 121, num. 1, p. 58-72Elsevier, Amsterdam, 2014.
. A participatory WebGIS platform to support biodiversity inventory in the Geneva cross-border area. Third Open Source Geospatial Research & Education Symposium (OGRS 2014), Otaniemi, Espoo, Finland, 2014.
. Genome-wide patterns of adaptation to climate-mediated selective pressures in sheep. The 34th ISAG Conference, Xi’an, China, 2014.
. High performance computation of landscape genomic models integrating local indices of spatial association, in arXiv Quantitative Biology, vol. [q-bio.PE], num. arXiv:1405.7658v1, 2014.
. The open source dynamics in geospatial research and education, in Journal of Spatial Information Science, num. 8, p. 67-71, 2014.
. Large-Scale Chondroitin Sulfate Proteoglycan Digestion with Chondroitinase Gene Therapy Leads to Reduced Pathology and Modulates Macrophage Phenotype following Spinal Cord Contusion Injury, in Journal Of Neuroscience, vol. 34, num. 14, p. 4822-4836Society for Neuroscience, Washington, 2014.
. Objective comparison of particle tracking methods, in Nature Methods, vol. 11, num. 3, p. 281-289Nature Publishing Group, London, 2014.
. A comparison of body mass index spatial dependence among adults and children in a Swiss general population, in Nutrition & Diabetes, num. 4, p. e111Nature Publishing Group, London, 2014.
. Assessing the spatial dependence of adaptive loci in 43 European and Western Asian goat breeds using AFLP markers, in Plos One, vol. 9, num. 1, p. e86668Public Library of Science, San Francisco, 2014.
. Investigation of genetic diversity of domestic C. hircus breeds reared within an early goat domestication area in Iran, in Genetics Selection Evolution, vol. 46, p. 27EDP Sciences, London, 2014.
. Spatial variability of soil phosphorus in the Fribourg canton, Switzerland, in Geoderma, vol. 217-218, p. 26-36, 2014.
. Quantitative single-cell RNA-seq with unique molecular identifiers, in Nature Methods, vol. 11, num. 2, p. 163-166, 2013-12-22.
. A Fast pH-Switchable and Self-Healing Supramolecular Hydrogel Carrier for Guided, Local Catheter Injection in the Infarcted Myocardium, in Advanced Healthcare Materials, vol. 3, num. 1, p. 70-78, 2013.
. Sustained Delivery Of Insulin-Like Growth Factor-1/Hepatocyte Growth Factor Promotes Endogenous Cardiac Repair And Regeneration In The Chronic Ischemic Heart. 62nd Annual Scientific Session of the American College of Cardiology, San Francisco, CA, 2013.
. Method and device for rapid dnp, US9329245, 2013.
. Analyse spatiale de la conflictualité, exploration par la régression géographiquement pondérée, in Canadian Journal of Regional Science, num. 36, p. 37-54, 2013.
. Geocomputational approaches for the analysis of Next-Generation Sequencing (NGS) and multi-scale data in landscape genomics. 11th Swiss Geoscience Meeting, Lausanne, 2013.
. A multiscale landscape genomics analytical framework to identify local adaptive variation in the Buckler Mustard. The IALE 2013 European Congress, Manchester, UK, 2013.
. SamBada in Uganda: landscape genomics study of traditional cattle breeds with a large SNP dataset. The IALE 2013 European Congress, Manchester, UK, 2013.
. Integrating landscape genomics and spatially explicit approaches to detect loci under selection in clinal populations, in Evolution -Lawrence Kansas-, vol. 67, num. 12, p. 3455-3468Wiley-Blackwell, Hoboken, 2013.
. eAtlas du Valais. , 2013.
. Uncovering the genetic basis of adaptive change: on the intersection of landscape genomics and theoretical population genetics, in Molecular Ecology, vol. 22, num. 14, p. 3659-3665Wiley-Blackwell, Hoboken, 2013.
. Analysis of B. taurus and B. indicus admixture in Uganda as revealed by the Illumina BovineSNP50 Genotyping BeadChip. Plant and Animal Genome (PAG) XXI, San Diego, 2013.
. GEOME, A web-based landscape genomics platform for the integrated analysis of spatial environmental and molecular data. Technology of Information for Geographic and Environment Research and Services (TIGERS) meeting 6, University of Geneva, 2012.
. Livestock landscape genomics to detect adaptive loci in 43 European and Near Eastern goat breeds. Genotype-by-Environment Interactions and Adaptation of Farm Animals on Phenotypic and Molecular Level, Tuusula, Finland, 2012.
. Utilization of the Scythe C++ open source library for statistical geocomputation in livestock landscape genomics. The Open Source Geospatial Research and Education Symposium (OGRS), Yverdon-les-Bains, Switzerland, 2012.
. Relatedness and scale dependency in very high resolution digital elevation models derivatives. Open Source Geospatial Research & Education Symposium 2012, Yverdon-les-Bains, Switzerland, 2012.
. Hydroweb: an Open Source educational WebGIS platform for the understanding of spatio-temporal variations of meteorological parameters at the watershed scale. The Open Source Geospatial Research and Education Symposium (OGRS), Yverdon-les-Bains, Switzerland, 2012.
. Next step: on the validation of the Q index to identify optimal locations for economic activities. 32nd International Congress of the International Geographic Union, Cologne, 2012.
. Use of Qualitative Environmental and Phenotypic Variables in the Context of Allele Distribution Models: Detecting Signatures of Selection in the Genome of Lake Victoria Cichlids, in Data Production and Analysis in Population Genomics, num. 888, p. 295-314Humana Press, Berlin, 2012.
. Les méthodes d’analyses spatiales et leurs applications à l’étude des conflits urbains. 80ème congrès de l'Association canadienne-française pour l’avancement des sciences (ACFAS), Montréal, 2012.
. The role of GIScience in landscape and conservation genetics. GIScience Colloquium, University of Zürich, 2012.
. Spatial Dependence of Body Mass Index: Geneva, Switzerland. Geneva Health Forum, Geneva, 2012.
. Landscape genomics of autochtonous livestock breeds: a role for geographic science in molecular ecology. Department of Ecology and Evolution Big seminar, University of Lausanne, Switzerland, 2012.
. Nouvelles technologies de télédétection pour la caractérisation de l’environnement urbain. Cycle de conférences en écologie urbaine, Laboratoire Population Environnement développement, Université d’Aix-Marseille, Marseille, 2012.
. A fine scale analysis of socio-economic and landscape variables for the assessment of health status in Geneva. Landscape and Health: Effects, Potential and Strategies, Birmensdorf, Switzerland, 2012.
. Landscape Genomics in Livestock, in Analysis of Genetic Variation in Animals, p. 360InTech, Rijeka, Croatia, 2012.
. Multiscale analysis of geomorphological and geological features in high resolution digital elevation models using the wavelet transform, in Geomorphology, vol. 138, num. 1, p. 352-363, 2012.
. Geneva urban health study. Débats-Buffets de la Société Médicale de Genève, HUG, Geneva, Switzerland, 2011.
. Les apports de la science de l'information géographique en génétique environnementale. Leçon d'épreuve, Faculté de Géosciences et de l'environnement, Université de Lausanne, Université de Lausanne, Switzerland, 2011.
. Information géographique et conservation des ressources génétiques végétales et animales. Les conférences de la Murithienne, Société valaisanne des Sciences Naturelles, Sion, 2011.
. GIS data integration and multicriteria analysis for the assessment of breeding activities sustainability. GLOBALDIV Final International Workshop, Ecole Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland, 2011.
. GIS-based breeding sustainability assessment. Swiss Association for Animal Production, Frühjahrstagung 2011 "Aktuelle Forschung in der Schweiz im Bereich Tierproduktion", Zollikofen, Switzerland, 2011.
. Very high resolution digital elevation models (VHR DEMs) and multiscale landscale genomics analysis applied to an alpine plant species. International Conference on Advances in GIS, Chicago, USA, 2011.
. Active multiple kernel learning of wind power resources. NIPS Workshop, Granada, Spain, 2011.
. Lentiviral vectors express chondroitinase ABC in cortical projections and promote sprouting of injured corticospinal axons, in Journal Of Neuroscience Methods, vol. 201, num. 1, p. 228-238, 2011.
. Genetic Diversity of Sheep Breeds from Albania, Greece, and Italy Assessed by Mitochondrial DNA and Nuclear Polymorphisms (SNPs), in TheScientificWorldJOURNAL, vol. 11, p. 1641-1659, 2011.
. Promoting collaboration between livestock and wildlife conservation genetics communities, in Conservation Genetics Resources, num. 3, p. 785-788, 2011.
. An integrated sustainability index for the geo-monitoring of the Swiss Brown Original (cattle) local socio-economic, socio-demographic and environmental context. Second GLOBALDIV Workshop, FAO, Rome, Italy, 2010.
. Analyse spatiale et systèmes complexes pour l’optimisation de la localisation des activités commerciales. Séminaire de 3ème cycle CUSO "Les SIG au service du développement territorial", EPFL, Lausanne Switzerland, 2010.
. Nominal and ordinal predictors in logistic regression for the identification of adaptive loci in animal and plant populations. S4 Conference and Workshops on Geosimulations and Risks, University of Lausanne, Switzerland, 2010.
. Conservazione sostenibile delle risorse genetiche animali. Convegno IREALP BIOD coltivare la biodiversità, Milano, Italy, 2010.
. Confronto tra distanze genetiche e distanze ecologiche tra razze di capre delle alpi svizzere e italiane. Convegno IREALP BIOD coltivare la biodiversità, Milano, Italy, 2010.
. Spatial analysis and complex systems for the optimization of retail trade localization. Workshop of the International Geographic Union (IGU) Applied Geography Commission CO8.01, Ericeira, Portugal, 2010.
. Environmental monitoring for landscape genomics. Workshop on geomatics technology for the monitoring of natural hazards, EPFL, Lausanne, Switzerland, 2010.
. GEOME : A web-based landscape genomics geocomputation platform. WebMGS 2010: 1st International Workshop on Pervasive Web Mapping, Geoprocessing and Services, Como, Italy, 2010.
. GEOME: Towards an integrated web-based landscape genomics platform. IUFRO 2010, Landscape Ecology International Conference, Bragança, Portugal, 2010.
. A Network Based Kernel Density Estimator Applied to Barcelona Economic Activities. International Conference on Computational Science and Its Applications, Fukuoka, JAPAN, 2010.
. Early stirrings of landscape genomics: Awaiting next-next generation sequencing platforms before take-off, in Sustainable Improvement of Animal Production and Health, p. 185-189Joint FAO/IAEA Division of Nuclear Techniques in Food and Agriculture, Rome, 2010.
. Perspectives on the use of landscape genetics to detect genetic adaptive variation in the field, in Molecular Ecology, num. 19, p. 3760-3772, 2010.
. Integrating geo-referenced multiscale and multidisciplinary data for the management of biodiversity in livestock genetic resources, in Animal Genetics, vol. 41, num. Suppl. 1, p. 47-63, 2010.
. Divergent selection in trailing- versus leading-edge populations of Biscutella laevigata, in Annals of Botany, vol. 105, num. 4, p. 655-660, 2010.
. Laplace-Gradient Wavelet Pyramid and Multiscale Tensor Structures Applied on High-Resolution DEMs, in Proceedings of Geomorphometry 2009 (G'09), num. Zürich ZH, Swiss Confederation, p. 124-132, 2009.
. Integrating geo-referenced multiscale and multidisciplinary data for the management of biodiversity in livestock genetic resources. First GLOBALDIV Workshop, University of Technology and Life Sciences, Bydgoszcz, Poland, 2009.
. GPS 4 PDG - géovisualisation de sujets mobiles lors de la patrouille des glaciers 2008, in Flash informatique, vol. spécial été, num. 1, p. 29-32, 2009.
. A Multimedia Retrieval System Using Speech Input. Proceedings of ICMI-MLMI 2009 (11th International Conference on Multimodal Interfaces and 6th Workshop on Machine Learning for Multimodal Interaction), Cambridge, MA, 2009.
. Early stirrings of landscape genomics: Awaiting next-next generation sequencing platforms before take-off. FAO/IAEA International Symposium on Sustainable Improvement of Animal Production and Health, Vienna (Austria), 2009.
. Integrating geo-referenced multiscale and multidisciplinary data for the management of biodiversity in livestocik genetic resources. First GLOBALDIV Workshop, Bydgoszcz, Poland, 2009.
. De la physique à la génomique environnementale, en passant par la science de l'information géographique, in De la physique expérimentale aux sciences et systèmes de l'information géographique, p. 151-154Ed. Lulu.com, London, 2009.
. De la physique expérimentale aux sciences et systèmes de l'information géographique. Ed. Lulu.com, London, 2009.
. Landscape genomics and biased FST approaches reveal single nucleotide polymorphisms under selection in goat breeds of North-East Mediterranean, in BMC Genetics, vol. 10, num. 7, 2009.
. Animal farming and GIS service, in Animal production and animal science worldwide, p. 175-185, 2008.
. Exploring the Geographic Dimension of Genetic Data. Annual Conference of the Association of American Geographers (AAG), Boston, USA, 2008.
. MFSA: a research center to promote the role of Geographic Science in interdisciplinary research: towards scientific discovery. IGU Commission on Applied Geography, 31st International Geographical Congress, Tunis (Tunisia), 2008.
. A landscape genomics approach to understanding and predicting species distribution. European Science Foundation (ESF) funded Workshop on Landscape Genetics within the ConGen programme, St-Hugues de Biviers/Grenoble (France), 2008.
. Spatial Analysis Method (SAM): a software tool combining molecular and environmental data to clarify candidate loci for selection, Molecular Ecology Resources, in Molecular Ecology Resources, vol. 8, p. 957-960, 2008.
. Un rôle pour la science de l'information géographique en écologie moléculaire La détection de régions du génome soumises à la sélection naturelle, in Revue internationale de géomatique, vol. 18, num. 2, p. 215-237, 2008.
. GIScience joining with molecular biology: a novel approach of detecting signatures of natural selection within the genome. Annual Conference of the Association of American Geographers (AAG), San Francisco, USA, 2007.
. Detecting footprints of selection in Ovis aries by a spatial analysis approach. ASPA 17th Congress, Alghero, Italy, 2007.
. A dedicated Geographic Exploration Interface for the monitoring of worldwide Farm Animal Genetic Resources. Geocomputation 2007, NUI Maynooth, Ireland, 2007.
. Quantitative Geography and Genomics: Spatial analysis to detect signatures of selection along a gradient of altitude in the common frog (Rana temporaria). 15th European Colloquium on Theoretical and Quantitative Geography (ECTQG), Montreux, Switzerland, 2007.
. Identifying European Marginal Areas in the Context of Local Sheep and Goat Breeds Conservation: A Geographic Information System Approach, in Agricultural Systems, vol. 94, num. 3, p. 657-670, 2007.
. A Spatial Analysis Method (SAM) to detect candidate loci for selection: towards a landscape genomics approach to adaptation, in Molecular Ecology, vol. 16, num. 18, p. 3955-3969, 2007.
Other publications
| Lassueur, T., Joost, S., Randin, C. 2006 Ecological Modelling, 198:139-153 |
Very high resolution digital elevation models: do they improve models of plant species distribution ? |
| Bertaglia, M., Joost, S., Roosen, J., and the Econogene Consortium 2007 Agricultural Systems, 94:657-670 |
Identifying European Marginal Areas in the Context of Local Sheep and Goat Breeds Conservation: A Geographic Information System Approach |
| Joost, S., Bonin, A., Taberlet, P., Caloz, R. 2008 Revue Internationale de G�omatique, 2:215-237 |
Un r�le pour la science de l'information g�ographique en �cologie mol�culaire: la d�tection de r�gions du g�nome soumises � la s�lection naturelle |
| Kalbermatten, M., Van De Ville, D., Turberg, P., Tuia, D., Joost, S. 2012 Geomorphology, 138:352�363 |
Multiscale analysis of geomorphological and geological features in high resolution digital elevation models using the wavelet transform |
| Joost, S., Bonin, A., Bruford, M.W., Despr�s, L., Conord, C., Erhardt, G., Taberlet, P. 2007 Molecular Ecology, 18:3955�3969 |
A Spatial Analysis Method (SAM) to detect candidate loci for selection: towards a landscape genomics approach to adaptation |
| Joost, S., Colli, L., Bonin, A., Biebach, I., Allendorf, F., Hoffmann, I., Hanotte, O., Taberlet, P., Bruford, M. and the GLOBALDIV Consortium 2011 Conservation Genetics Resources, 3:785�788 |
Promoting collaboration between livestock and wildlife conservation genetics communities |
| Parisod, C., Joost, S. 2010 Annals of Botany, doi: 10.1093/aob/mcq014 |
Divergent selection in trailing versus leading edge populations of Biscutella laevigata |
| Scott, E.C., Matzke, N.J., Branch, G., Steve et al. 2004 Annals of Improbable Research, July-August 2004 |
The Morphology of Steve |
| Pariset, L., Joost, S., Ajmone Marsan, P., Valentini, A. 2009 BMC Genetics, 10:7 |
Landscape genomics and biased FST approaches reveal Single Nucleotide Polymorphisms under selection in goat breeds of North-East Mediterranean |
| S. Joost, L. Colli, P. V. Baret, J. F. Garcia, P. J. Boettcher, M. Tixier-Boichard, P. Ajmone-Marsan, and Globaldiv Consortium 2010 Animal Genetics, 41(Suppl. 1):47-63 |
Integrating geo-referenced multiscale and multidisciplinary data for the management of biodiversity in livestock genetic resources |
| Joost, S., Kalbermatten, M., Bonin, A. 2008 Molecular Ecology Resources, 8:957�960 |
Spatial Analysis Method (SAM): a software tool combining molecular and environmental data to identify candidate loci for selection |
