Felix Naef
EPFL SV IBI-SV UPNAE
AAB 0 40 (Bâtiment AAB)
Station 15
CH-1015 Lausanne
EPFL SV SSV-GE
AAB 0 40 (Bâtiment AAB)
Station 19
CH-1015 Lausanne
Biography
Felix Naef studied theoretical physics at the ETHZ and obtained his PhD from the EPFL in 2000. He then received postdoctoral training at the Center for Studies in Physics and Biology at the Rockefeller University (NYC) under the guidance of Prof. Magnasco. His research focuses on the modeling and interpretation of high-throughput functional data and the study of biomolecular oscillators. He joined ISREC as an associate scientist in early 2004 and was nominated Tenure Track Assistant Professor at the EPFL School of Life Sciences in 2005. He is currently a member of the Institute of Bioengineering (IBI).
Publications
Infoscience
J. Yeung / F. Naef (Dir.) : Tissue-specific circadian transcriptional regulation. Lausanne, EPFL, 2019. DOI : 10.5075/epfl-thesis-8893.
C. A. Gobet / F. Naef; K. Sakamoto (Dir.) : Circadian clock- and feeding-dependent regulation of translation initiation and elongation in the liver. Lausanne, EPFL, 2018. DOI : 10.5075/epfl-thesis-8900.
O. Tidin / D. M. Suter; F. Naef (Dir.) : Quantitative single cell dynamics of signaling and transcriptional response in mammalian cells. Lausanne, EPFL, 2018. DOI : 10.5075/epfl-thesis-8629.
J. Yeung; J. Mermet; C. Jouffe; J. Marquis; A. Charpagne et al. : Transcription factor activity rhythms and tissue-specific chromatin interactions explain circadian gene expression across organs; GENOME RESEARCH. 2018. DOI : 10.1101/gr.222430.117.
D. Nicolas; B. Zoller; D. Suter; F. Naef : Modulation of transcriptional burst frequency by histone acetylation; PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2018. DOI : 10.1073/pnas.1722330115.
C. Jayaraman; S. Hoppe-Ludwig; S. Deems-Dluhy; M. McGuire; C. Mummidisetty et al. : Impact of Powered Knee-Ankle Prosthesis on Low Back Muscle Mechanics in Transfemoral Amputees: A Case Series; FRONTIERS IN NEUROSCIENCE. 2018. DOI : 10.3389/fnins.2018.00134.
J. Mermet; J. Yeung; C. Hurni; D. Mauvoisin; K. Gustafson et al. : Clock-dependent chromatin topology modulates circadian transcription and behavior; GENES AND DEVELOPMENT. 2018. DOI : 10.1101/gad.312397.118.
J. Wang; L. Symul; J. Yeung; C. Gobet; J. Sobel et al. : Circadian clock-dependent and -independent posttranscriptional regulation underlies temporal mRNA accumulation in mouse liver; PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2018. DOI : 10.1073/pnas.1715225115.
M. E. Hughes; K. C. Abruzzi; R. Allada; R. Anafi; A. B. Arpat et al. : Guidelines for Genome-Scale Analysis of Biological Rhythms; Journal Of Biological Rhythms. 2017. DOI : 10.1177/0748730417728663.
D. L. Nicolas / F. Naef; D. M. Suter (Dir.) : Rhythmic modulation of transcriptional burst frequency in circadian gene promoters. Lausanne, EPFL, 2017. DOI : 10.5075/epfl-thesis-8016.
D. Nicolas; N. E. Phillips; F. Naef : What shapes eukaryotic transcriptional bursting?; Molecular Biosystems. 2017. DOI : 10.1039/c7mb00154a.
D. Mauvoisin; F. Atger; L. Dayon; A. N. Galindo; J. Wang et al. : Circadian and Feeding Rhythms Orchestrate the Diurnal Liver Acetylome; Cell Reports. 2017. DOI : 10.1016/j.celrep.2017.07.065.
C. Gobet; F. Naef : Ribosome profiling and dynamic regulation of translation in mammals; Current Opinion In Genetics & Development. 2017. DOI : 10.1016/j.gde.2017.03.005.
B. Sharp; E. Paquet; F. Naef; A. Bafna; H. Wijnen : A new promoter element associated with daily time keeping in Drosophila; Nucleic Acids Research. 2017. DOI : 10.1093/nar/gkx268.
J. A. Sobel; I. Krier; T. Andersin; S. Raghav; D. Canella et al. : Transcriptional regulatory logic of the diurnal cycle in the mouse liver; PLoS Biology. 2017. DOI : 10.1371/journal.pbio.2001069.
J. Mermet; J. Yeung; F. Naef : Systems Chronobiology: Global Analysis of Gene Regulation in a 24-Hour Periodic World; Cold Spring Harbor Perspectives In Biology. 2017. DOI : 10.1101/cshperspect.a028720.
J. Mermet; J. Yeung; F. Naef : Systems Chronobiology: Global Analysis of Gene Regulation in a 24-Hour Periodic World; Cold Spring Harbor Perspectives In Medicine. 2017. DOI : 10.1101/cshperspect.a028720.
J. Wang; D. Mauvoisin; E. Martin; F. Atger; A. N. Galindo et al. : Nuclear Proteomics Uncovers Diurnal Regulatory Landscapes in Mouse Liver; Cell Metabolism. 2017. DOI : 10.1016/j.cmet.2016.10.003.
J. Mermet / F. Naef (Dir.) : Rhythmic and clock-dependent chromatin loops regulate circadian gene expression. Lausanne, EPFL, 2017. DOI : 10.5075/epfl-thesis-7485.
I. Gotic; S. Omidi; F. Fleury-Olela; N. Molina; F. Naef et al. : Temperature regulates splicing efficiency of the cold-inducible RNA-binding protein gene Cirbp; Genes & Development. 2016. DOI : 10.1101/gad.287094.116.
C. Naef : Learning from Tokyo: translation, seuils et interstices à Berlin ; 2016.
J. A. Sobel / F. Naef (Dir.) : Phase specific transcriptional regulation of circadian clock and metabolism in mouse liver. Lausanne, EPFL, 2016. DOI : 10.5075/epfl-thesis-7188.
R. Cannavo / F. Naef (Dir.) : Circadian rhythm and cell cycle. Lausanne, EPFL, 2016. DOI : 10.5075/epfl-thesis-6902.
M. Bischofberger; I. Iacovache; D. Boss; F. Naef; F. G. van der Goot et al. : Revealing Assembly of a Pore-Forming Complex Using Single-Cell Kinetic Analysis and Modeling; Biophysical journal. 2016. DOI : 10.1016/j.bpj.2016.02.035.
A. De Simone / P. Gönczy; F. Naef (Dir.) : Mechanisms of centrosome separation in C. elegans. Lausanne, EPFL, 2016. DOI : 10.5075/epfl-thesis-6916.
F. Atger; C. Gobet; J. Marquis; E. Martin; J. Wang et al. : Circadian and feeding rhythms differentially affect rhythmic mRNA transcription and translation in mouse liver; Proceedings Of The National Academy Of Sciences Of The United States Of America. 2015. DOI : 10.1073/pnas.1515308112.
V. Bartenbach; K. Schmidt; M. Naef; D. Wyss; R. Riener : Concept of a soft exosuit for the support of leg function in rehabilitation. 2015. 2015 IEEE International Conference on Rehabilitation Robotics (ICORR), Singapore, Singapore, 11-14 August 2015. p. 125-130. DOI : 10.1109/ICORR.2015.7281187.
L. Pattaroni; F. Benhamou; I. Naef Galuba; C. Schiaretti; S. Kanaan : Culture, Argent, Public et Société ; Cycle La Culture Créatrice de Valeurs, Palais Eynard, Genève, Suisse, Novembre 23, 2015.
B. Zoller; D. L. Nicolas; N. Molina; F. Naef : Structure of silent transcription intervals and noise characteristics of mammalian genes; Molecular Systems Biology. 2015. DOI : 10.15252/msb.20156257.
S. Blanchoud; D. Nicolas; B. Zoller; O. Tidin; F. Naef : CAST: An automated segmentation and tracking tool for the analysis of transcriptional kinetics from single-cell time-lapse recordings; Methods (San Diego, Calif.). 2015. DOI : 10.1016/j.ymeth.2015.04.023.
S. Blanchoud; C. Busso; F. Naef; P. Gönczy : Quantitative Analysis and Modeling Probe Polarity Establishment in C. elegans Embryos; Biophysical journal. 2015. DOI : 10.1016/j.bpj.2014.12.022.
J. Becker / F. Naef; S. Maerkl (Dir.) : Quantitative single-cell analysis of S. cerevisiae using a microfluidic live-cell imaging platform. Lausanne, EPFL, 2015. DOI : 10.5075/epfl-thesis-6519.
B. Zoller / F. Naef (Dir.) : Modeling of transcription mechanisms in mammals from kinetic measurements in single cells. Lausanne, EPFL, 2014. DOI : 10.5075/epfl-thesis-6414.
M. Quinodoz; C. Gobet; F. Naef; K. B. Gustafson : Characteristic bimodal profiles of RNA polymerase II at thousands of active mammalian promoters; Genome Biology. 2014. DOI : 10.1186/gb-2014-15-6-r85.
J. Bieler; R. Cannavo; K. Gustafson; C. A. Gobet; G. David et al. : Robust synchronization of coupled circadian and cell cycle oscillators in single mammalian cells; Molecular Systems Biology. 2014. DOI : 10.15252/msb.20145218.
J. Bieler / F. Naef (Dir.) : Spatio-temporal synchronization of biological oscillators. Lausanne, EPFL, 2014. DOI : 10.5075/epfl-thesis-6319.
J. Hoffmann; L. Symul; A. Shostak; T. Fischer; F. Naef et al. : Non-Circadian Expression Masking Clock-Driven Weak Transcription Rhythms in U2OS Cells; Plos One. 2014. DOI : 10.1371/journal.pone.0102238.
B. Knight; S. Kubik; B. Ghosh; M. J. Bruzzone; M. Geertz et al. : Two distinct promoter architectures centered on dynamic nucleosomes control ribosomal protein gene transcription; Genes & Development. 2014. DOI : 10.1101/gad.244434.114.
J. C. Cajan / F. Naef; B. Deplancke (Dir.) : Context-specific regulation of BMAL1 target genes during the circadian rhythm in mouse. Lausanne, EPFL, 2014. DOI : 10.5075/epfl-thesis-6308.
D. Mauvoisin; J. Wang; C. Jouffe; E. Martin; F. Atger et al. : Circadian clock-dependent and -independent rhythmic proteomes implement distinct diurnal functions in mouse liver; Proceedings Of The National Academy Of Sciences Of The United States Of America. 2014. DOI : 10.1073/pnas.1314066111.
N. Molina; D. M. Suter; R. Cannavo; B. Zoller; I. Gotic et al. : Stimulus-induced modulation of transcriptional bursting in a single mammalian gene; Proceedings Of The National Academy Of Sciences Of The United States Of America. 2013. DOI : 10.1073/pnas.1312310110.
L. Symul / F. Naef (Dir.) : Kinetic Analysis of Transcriptional and Post-Transcriptional Processes During Circadian Cycles. Lausanne, EPFL, 2013. DOI : 10.5075/epfl-thesis-5911.
T. d'Eysmond; A. De Simone; F. Naef : Analysis of precision in chemical oscillators: implications for circadian clocks; Physical biology. 2013. DOI : 10.1088/1478-3975/10/5/056005.
N. Dénervaud; J. Becker; R. Delgado-Gonzalo; P. Damay; A. S. Rajkumar et al. : A chemostat array enables the spatio-temporal analysis of the yeast proteome; Proceedings of the National Academy of Sciences of the United States of America. 2013. DOI : 10.1073/pnas.1308265110.
J. Simicevic; A. W. Schmid; P. A. Gilardoni; B. Zoller; S. K. Raghav et al. : Absolute quantification of transcription factors during cellular differentiation using multiplexed targeted proteomics; Nature methods. 2013. DOI : 10.1038/nmeth.2441.
S. Blanchoud / P. Gönczy; F. Naef (Dir.) : Quantitative analysis and mathematical modeling of polarity establishment in C. elegans embryos. Lausanne, EPFL, 2013. DOI : 10.5075/epfl-thesis-5863.
M. Marmier; D. Segransan; S. Udry; M. Mayor; F. Pepe et al. : The CORALIE survey for southern extrasolar planets XVII. New and updated long period and massive planets; Astronomy & Astrophysics. 2013. DOI : 10.1051/0004-6361/201219639.
C. Jouffe; G. Cretenet; L. Symul; E. Martin; F. Atger et al. : The Circadian Clock Coordinates Ribosome Biogenesis; Plos Biology. 2013. DOI : 10.1371/journal.pbio.1001455.
N. Dénervaud / S. Maerkl; F. Naef (Dir.) : A microfluidic live-cell imaging platform to study large collections of microbial genotypes. Lausanne, EPFL, 2013. DOI : 10.5075/epfl-thesis-5593.
G. Le Martelot; D. Canella; L. Symul; E. Migliavacca; F. Gilardi et al. : Genome-Wide RNA Polymerase II Profiles and RNA Accumulation Reveal Kinetics of Transcription and Associated Epigenetic Changes During Diurnal Cycles; Plos Biology. 2012. DOI : 10.1371/journal.pbio.1001442.
F. Moser; R. Naef : Promotion of Science among Youngsters: Today's Crucial Mission for Tomorrow's Society; Chimia. 2012.
J. Morf; G. Rey; K. Schneider; M. Stratmann; J. Fujita et al. : Cold-Inducible RNA-Binding Protein Modulates Circadian Gene Expression Posttranscriptionally; Science. 2012. DOI : 10.1126/science.1217726.
M. Stratmann; D. M. Suter; N. Molina; F. Naef; U. Schibler : Circadian Dbp Transcription Relies on Highly Dynamic BMAL1-CLOCK Interaction with E Boxes and Requires the Proteasome; Molecular Cell. 2012. DOI : 10.1016/j.molcel.2012.08.012.
D. M. Suter; N. Molina; D. Gatfield; K. Schneider; U. Schibler et al. : Mammalian genes are transcribed with widely different bursting kinetics; Science (New York, N.Y.). 2011. DOI : 10.1126/science.1198817.
J. Bieler; C. Pozzorini; F. Naef : Whole-embryo modeling of early segmentation in Drosophila identifies robust and fragile expression domains; Biophysical journal. 2011. DOI : 10.1016/j.bpj.2011.05.060.
J. Rougemont; F. Naef : Computational analysis of protein-DNA interactions from ChIP-seq data; Methods in molecular biology (Clifton, N.J.). 2011. DOI : 10.1007/978-1-61779-292-2_16.
D. M. Suter; N. Molina; F. Naef; U. Schibler : Origins and consequences of transcriptional discontinuity; Current opinion in cell biology. 2011. DOI : 10.1016/j.ceb.2011.09.004.
I. Gyurján; B. Sonderegger; F. Naef; D. Duboule : Analysis of the dynamics of limb transcriptomes during mouse development; BMC developmental biology. 2011. DOI : 10.1186/1471-213X-11-47.
T. D'Eysmond / F. Naef (Dir.) : On the Precision of Circadian Oscillators. Lausanne, EPFL, 2011. DOI : 10.5075/epfl-thesis-5157.
G. Rey / F. Naef (Dir.) : On the Relationship Between Protein-DNA Interactions and Circadian Gene Expression in Mouse Liver. Lausanne, EPFL, 2011. DOI : 10.5075/epfl-thesis-5101.
G. Rey; F. Cesbron; J. Rougemont; H. Reinke; M. Brunner et al. : Genome-Wide and Phase-Specific DNA-Binding Rhythms of BMAL1 Control Circadian Output Functions in Mouse Liver; PLoS biology. 2011. DOI : 10.1371/journal.pbio.1000595.
M. Bischofberger / F. Naef; F. G. v. d. Goot Grunberg (Dir.) : Assembly Mechanisms and Cellular Effects of Bacterial Pore-Forming Toxins. Lausanne, EPFL, 2011. DOI : 10.5075/epfl-thesis-4896.
D. Segransan; S. Udry; M. Mayor; D. Naef; F. Pepe et al. : The CORALIE survey for southern extrasolar planets XVI. Discovery of a planetary system around HD 147018 and of two long period and massive planets orbiting HD 171238 and HD 204313; Astronomy & Astrophysics. 2010. DOI : 10.1051/0004-6361/200912136.
A. Egri-Nagy; B. Galliot; F. Naef; C. L. Nehaniv : Information processing in cells and tissues (IPCAT'2009): from small scale dynamics to understanding systems behavior; Bio Systems. 2010. DOI : 10.1016/j.biosystems.2010.07.015.
S. Blanchoud; Y. Budirahardja; F. Naef; P. Gönczy : ASSET: A robust algorithm for the automated segmentation and standardization of early Caenorhabditis elegans embryos; Developmental dynamics. 2010. DOI : 10.1002/dvdy.22486.
L. Sinclair : Development of an interactive genome browser to visualize and analyse large scale genomic data ; 2010.
E. Pellet : Dissecting the regulation of the key transcription factors T-bet and GATA3 in T-helper cells ; 2010.
G. Stoll; M. Bischofberger; J. Rougemont; F. Naef : Stabilizing patterning in the Drosophila segment polarity network by selecting models in silico; Bio Systems. 2010. DOI : 10.1016/j.biosystems.2010.07.014.
M. Preti; C. Ribeyre; C. Pascali; M. C. Bosio; B. Cortelazzi et al. : The telomere-binding protein Tbf1 demarcates snoRNA gene promoters in Saccharomyces cerevisiae; Molecular cell. 2010. DOI : 10.1016/j.molcel.2010.04.016.
H. Yasrebi / P. Bucher; F. Naef (Dir.) : Prediction of Survival and Risk Assessment Using Joint Analysis of Microarray Gene Expression Data. Lausanne, EPFL, 2010. DOI : 10.5075/epfl-thesis-4494.
F. Parisi; B. Sonderegger; P. Wirapati; M. Delorenzi; F. Naef : Relationship between estrogen receptor alpha location and gene induction reveals the importance of downstream sites and cofactors; BMC genomics. 2009. DOI : 10.1186/1471-2164-10-381.
S. P. Hazen; F. Naef; T. Quisel; J. M. Gendron; H. Chen et al. : Exploring the transcriptional landscape of plant circadian rhythms using genome tiling arrays; Genome biology. 2009. DOI : 10.1186/gb-2009-10-2-r17.
C. Dibner; D. Sage; M. Unser; C. Bauer; T. d'Eysmond et al. : Circadian gene expression is resilient to large fluctuations in overall transcription rates; The EMBO journal. 2009. DOI : 10.1038/emboj.2008.262.
J.-D. Bénazet; M. Bischofberger; E. Tiecke; A. Gonçalves; J. F. Martin et al. : A self-regulatory system of interlinked signaling feedback loops controls mouse limb patterning; Science. 2009. DOI : 10.1126/science.1168755.
J. Bieler : Reconstructing the segmentation network in real space ; 2009.
I. Krier : Dynamic modeling of the TOR signaling pathway in yeast ; 2009.
D. Perritaz; C. Salzmann; D. Gillet; O. Naef; J. Bapst et al. : 6th Sense - Toward a Generic Framework for End-to-End Adaptive Wearable Augmented Reality; Lecture Notes in Computer Science on Human Machine Interaction. 2009. DOI : 10.1007/978-3-642-00437-7_11.
F. Parisi; F. Naef; H. Koeppl : Network inference by combining biologically motivated regulatory constraints with penalized regression; Annals of New York Academy of Sciences. 2009. DOI : 10.1111/j.1749-6632.2008.03751.x.
J. Rougemont; F. Naef : Stochastic phase oscillator models for circadian clocks; Cellular Oscillatory Mechanisms. 2008. DOI : 10.1007/978-0-387-09794-7_10.
J. Rougemont; A. Amzallag; C. Iseli; L. Farinelli; I. Xenarios et al. : Probabilistic base calling of Solexa sequencing data; BMC bioinformatics. 2008. DOI : 10.1186/1471-2105-9-431.
E. R. Paquet; G. Rey; F. Naef : Modeling an evolutionary conserved circadian cis-element; PLoS computational biology. 2008. DOI : 10.1371/journal.pcbi.0040038.
M.-O. Sauvain; A. P. Dorr; B. Stevenson; A. Quazzola; F. Naef et al. : Genotypic features of lentivirus transgenic mice; Journal of virology. 2008. DOI : 10.1128/JVI.00623-08.
J. Rougemont; F. Naef : Stochastic phase oscillators and circadian bioluminescence recordings. 2007. 72nd Cold Spring Harbor Symposium on Quantitative Biology, Cold Spring Harbor, NY, May 30, 2007. p. 405-411.
G. Stoll; J. Rougemont; F. Naef : Representing perturbed dynamics in biological network models; Physical review. E, Statistical, nonlinear, and soft matter physics. 2007. DOI : 10.1103/PhysRevE.76.011917.
J. Rougemont; F. Naef : Stochastic phase oscillators and circadian bioluminescence recordings; Cold Spring Harbor symposia on quantitative biology. 2007. DOI : 10.1101/sqb.2007.72.044.
J. Rougemont; F. Naef : Dynamical signatures of cellular fluctuations and oscillator stability in peripheral circadian clocks; Molecular systems biology. 2007. DOI : 10.1038/msb4100130.
F. Parisi; P. Wirapati; F. Naef : Identifying synergistic regulation involving c-Myc and sp1 in human tissues; Nucleic acids research. 2007. DOI : 10.1093/nar/gkl1157.
C. E. Boothroyd; H. Wijnen; F. Naef; L. Saez; M. W. Young : Integration of light and temperature in the regulation of circadian gene expression in Drosophila; PLoS genetics. 2007. DOI : 10.1371/journal.pgen.0030054.
S. Sarafijanovic; L. Hernandez; R. Naefen; J.-Y. Le Boudec : AntispamLab - A Tool for Realistic Evaluation of Email Spam Filters. 2007. Fourth Conference on Email and Antispam, Mountain View, California, USA, August 2-3, 2007.
G. Corminboeuf; M. Amrhein; O. Naef; P. Voirin; E. Vanoli et al. : Automatic detection of reaction start/endpoints in chemical and biotechnological reaction systems; Chemometrics and Intelligent Laboratory Systems. 2007. DOI : 10.1016/j.chemolab.2006.06.015.
H. Wijnen; F. Naef; C. Boothroyd; A. Claridge-Chang; M. W. Young : Control of daily transcript oscillations in Drosophila by light and the circadian clock; PLoS genetics. 2006. DOI : 10.1371/journal.pgen.0020039.
G. Stoll; J. Rougemont; F. Naef : Few crucial links assure checkpoint efficiency in the yeast cell-cycle network; Bioinformatics. 2006. DOI : 10.1093/bioinformatics/btl432.
J. Rougemont; F. Naef : Collective synchronization in populations of globally coupled phase oscillators with drifting frequencies; Physical review. E, Statistical, nonlinear, and soft matter physics. 2006. DOI : 10.1103/PhysRevE.73.011104.
D. A. Lim; M. Suárez-Fariñas; F. Naef; C. R. Hacker; B. Menn et al. : In vivo transcriptional profile analysis reveals RNA splicing and chromatin remodeling as prominent processes for adult neurogenesis; Molecular and cellular neurosciences. 2006. DOI : 10.1016/j.mcn.2005.10.005.
D. Retelska; C. Iseli; P. Bucher; C. V. Jongeneel; F. Naef : Similarities and differences of polyadenylation signals in human and fly; BMC Genomics. 2006. DOI : 10.1186/1471-2164-7-176.
N. Ben-Haim; C. Lu; M. Guzman-Ayala; L. Pescatore; D. Mesnard et al. : The nodal precursor acting via activin receptors induces mesoderm by maintaining a source of its convertases and BMP4; Dev Cell. 2006. DOI : 10.1016/j.devcel.2006.07.005.
H. Wijnen; F. Naef; M. W. Young : Molecular and statistical tools for circadian transcript profiling; Methods in enzymology. 2005. DOI : 10.1016/S0076-6879(05)93015-2.
U. Schibler; F. Naef : Cellular oscillators: rhythmic gene expression and metabolism; Current opinion in cell biology. 2005. DOI : 10.1016/j.ceb.2005.01.007.
F. Naef : Circadian clocks go in vitro: purely post-translational oscillators in cyanobacteria; Molecular systems biology. 2005. DOI : 10.1038/msb4100027.
T. J. Gardner; F. Naef; F. Nottebohm : Freedom and rules: the acquisition and reprogramming of a bird's learned song; Science. 2005. DOI : 10.1126/science.1108214.
Teaching & PhD
Teaching
- Life Sciences Engineering,
PhD Programs
- Doctoral Program in Molecular Life Sciences
- Doctoral Program in Biotechnology and Bioengineering
- Doctoral Program in Environment
- Doctoral Program in Physics
- Doctoral Program in Computational and Quantitative Biology
PhD Students
Droin Colas Noé
Hurni Clémence Yumie Syloun
Talamanca Lorenzo
Bieler Jonathan ...
Bischofberger Mirko ...
Blanchoud Simon ...
Cajan Julia Catharina ...
Cannavo Rosamaria ...
De Simone Alessandro ...
Dénervaud Nicolas ...
Gobet Cédric André ...
Mermet Jérôme ...
Nicolas Damien Lionel ...
Rey Guillaume ...
Sobel Jonathan Aryeh ...
Symul Laura ...
Tidin Onur ...
Yasrebi Haleh ...
Yeung Jake ...
Zoller Benjamin ...
d'Eysmond Thomas ...
Hurni Clémence Yumie Syloun
Talamanca Lorenzo
Past PhD Students
Becker Johannes ...Bieler Jonathan ...
Bischofberger Mirko ...
Blanchoud Simon ...
Cajan Julia Catharina ...
Cannavo Rosamaria ...
De Simone Alessandro ...
Dénervaud Nicolas ...
Gobet Cédric André ...
Mermet Jérôme ...
Nicolas Damien Lionel ...
Rey Guillaume ...
Sobel Jonathan Aryeh ...
Symul Laura ...
Tidin Onur ...
Yasrebi Haleh ...
Yeung Jake ...
Zoller Benjamin ...
d'Eysmond Thomas ...
Courses
Mathematical and Computational Models in Biology
This course introduces dynamical systems theory for modeling simple biological networks, e.g. gene circuits or population dynamics. Qualitative analysis of non-linear dynamical models will be developed together with simulations. The focus is on biologica... 