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Maria Josefina Marcaida Lopez

Nationality: Spanish

EPFL SV IBI-SV UPDALPE
AI 2351.F (Bâtiment AI)
Station 19
1015 Lausanne

Expertise

Protein crystallography Protein-nucleic acid complexes Kinase-small molecule interactions

FELLOWSHIPS & AWARDS

• Marie Heim-Vögtlin Postdoctoral Fellowship SNSF March 2012-August 2014 • CRUS Dual career couples, September 2011 & January 2012 • Human Frontiers Short Term Fellowship, September- December 2009 • Juan de la Cierva Postdoctoral Fellowship 2009-2011 • EMBO Long term Fellowship 2007-2008 • Wellcome Trust Prize Studentship 2001-2005 • Final Year Project Award, Imperial College, 2001

Education

M.Sci.

| Physics

1997 – 2001 Imperial College London, U.K.

Ph.D.

| Biochemistry and protein crystallography

2001 – 2005 University of Cambridge, U.K.
Directed by Supervisor: Ben Luisi

Professionals experiences

Scientist

Postdoctoral Fellow

JOURNAL ARTICLES

Structural characterization of Prolyl endopeptidase-like, a mitochondrial protein involved in congenital myasthenic syndrome-22

A. TheodoropoulouE. CavaniY. MonnensM. MarcaidaJ. Creemers  et al.

2023-07-01. p. S109-S109.

Using integrative structural biology for the identification of novel aerolysin-like pore forming toxins for nanopore sensing

J. S. AntonF. MeirelesJ. F. BadaM. J. MarcaidaM. Dal Peraro

2023-07-01. p. S116-S116.

Structure and dynamics of Toll immunoreceptor activation in the mosquito Aedes aegypti

Y. SaucereauT. H. WilsonM. C. K. TangM. C. MoncrieffeS. W. Hardwick  et al.

Nature Communications. 2022-08-30. DOI : 10.1038/s41467-022-32690-6.

Prolyl endopeptidase-like is a (thio)esterase involved in mitochondrial respiratory chain function

K. RosierM. T. McDevittJ. SmetB. J. FloydM. Verschoore  et al.

Iscience. 2021-12-17. DOI : 10.1016/j.isci.2021.103460.

Palmitoylated acyl protein thioesterase APT2 deforms membranes to extract substrate acyl chains

L. AbramiM. AudagnottoS. HoM. J. MarcaidaF. S. Mesquita  et al.

Nature Chemical Biology. 2021-04-01. DOI : 10.1038/s41589-021-00753-2.

The Human RNA Helicase DDX21 Presents a Dimerization Interface Necessary for Helicase Activity

M. J. Marcaida LopezA. KauzlaricA. DuperrexJ. SülzleM. C. Moncrieffe  et al.

iScience. 2020-11-18. DOI : 10.1016/j.isci.2020.101811.

The Polyglutamine Expansion at the N-Terminal of Huntingtin Protein Modulates the Dynamic Configuration and Phosphorylation of the C-Terminal HEAT Domain

T. JungB. ShinG. TamoH. KimR. Vijayvargia  et al.

Structure. 2020-09-01. DOI : 10.1016/j.str.2020.06.008.

Btk SH2-kinase interface is critical for allosteric kinase activation and its targeting inhibits B-cell neoplasms

D. P. DuarteA. J. LamontanaraG. La SalaS. JeongY.-K. Sohn  et al.

Nature Communications. 2020-05-08. DOI : 10.1038/s41467-020-16128-5.

Structural and functional divergence of duplicated mosquito Toll and Spz compared to Drosophila

Y. SaucereauM. J. MarcaidaM. Gangloff

2020-05-01. Annual Meeting of the American-Association-of-Immunologists - Immunology 2020, Honolulu, HI, May 08-12, 2020.

Single-molecule sensing of peptides and nucleic acids by engineered aerolysin nanopores

C. CaoN. CirauquiM. J. MarcaidaE. BuglakovaA. Duperrex  et al.

Nature Communications. 2019-10-29. DOI : 10.1038/s41467-019-12690-9.

KAP1 is an antiparallel dimer with a functional asymmetry

G. FontiM. J. MarcaidaL. C. BryanS. TraegerA. S. Kalantzi  et al.

Life Science Alliance. 2019-08-01. DOI : 10.26508/lsa.201900349.

Structure and dynamics of mesophilic variants from the homing endonuclease I-DmoI

J. AlbaM. J. MarcaidaJ. PrietoG. MontoyaR. Molina  et al.

Journal Of Computer-Aided Molecular Design. 2017. DOI : 10.1007/s10822-017-0087-5.

Key Players in I-DmoI Endonuclease Catalysis Revealed from Structure and Dynamics

R. MolinaN. BeskerM. J. MarcaidaG. MontoyaJ. Prieto  et al.

ACS chemical biology. 2016. DOI : 10.1021/acschembio.5b00730.

Discovery of a Selective Aurora A Kinase Inhibitor by Virtual Screening

F. KilchmannM. J. MarcaidaS. KotakT. SchickS. D. Boss  et al.

Journal Of Medicinal Chemistry. 2016. DOI : 10.1021/acs.jmedchem.6b00709.

X-ray structure of a lectin-bound DNA duplex containing an unnatural phenanthrenyl pair

P. RoethlisbergerA. IstrateM. J. M. LopezR. VisiniA. Stocker  et al.

Chemical Communications. 2016. DOI : 10.1039/c6cc00374e.

Engineering a Nickase on the Homing Endonuclease I-DmoI Scaffold

R. MolinaM. J. MarcaidaP. RedondoM. MarenchinoP. Duchateau  et al.

The Journal of biological chemistry. 2015. DOI : 10.1074/jbc.M115.658666.

Bridged bicyclic peptides as potential drug scaffolds: synthesis, structure, protein binding and stability

M. BartoloniX. JinM. J. MarcaidaJ. BanhaI. Dibonaventura  et al.

Chemical Science. 2015. DOI : 10.1039/c5sc01699a.

Structural insights on cholesterol endosynthesis: Binding of squalene and 2,3-oxidosqualene to supernatant protein factor

M. ChristenM. J. MarcaidaC. LamprakisW. AeschimannJ. Vaithilingam  et al.

Journal Of Structural Biology. 2015. DOI : 10.1016/j.jsb.2015.05.001.

Oxypurinol directly and immediately activates the drug-specific T cells via the preferential use of HLA-B*58:01

J. YunM. J. MarcaidaK. K. ErikssonH. JaminS. Fontana  et al.

Journal of immunology (Baltimore, Md. : 1950). 2014. DOI : 10.4049/jimmunol.1302306.

Visualizing phosphodiester-bond hydrolysis by an endonuclease

R. MolinaS. StellaP. RedondoH. GomezM. J. Marcaida  et al.

Nature structural & molecular biology. 2014. DOI : 10.1038/nsmb.2932.

Solution structure of human growth arrest and DNA damage 45alpha (Gadd45alpha) and its interactions with proliferating cell nuclear antigen (PCNA) and Aurora A kinase

R. SánchezD. Pantoja-UcedaJ. PrietoT. DiercksM. J. Marcaida  et al.

The Journal of biological chemistry. 2010. DOI : 10.1074/jbc.M109.069344.

Homing endonucleases: from basics to therapeutic applications

M. J. MarcaidaI. G. MuñozF. J. BlancoJ. PrietoG. Montoya

Cellular and molecular life sciences : CMLS. 2009. DOI : 10.1007/s00018-009-0188-y.

Molecular basis of histone H3K4me3 recognition by ING4

A. PalaciosI. G. MuñozD. Pantoja-UcedaM. J. MarcaidaD. Torres  et al.

The Journal of biological chemistry. 2008. DOI : 10.1074/jbc.M710020200.

Complementing structural information of modular proteins with small angle neutron scattering and contrast variation

J. G. GrossmannA. J. CallaghanM. J. MarcaidaB. F. LuisiF. H. Alcock  et al.

European biophysics journal : EBJ. 2008. DOI : 10.1007/s00249-008-0278-z.

The crystal structure of the Escherichia coli RNase E apoprotein and a mechanism for RNA degradation

D. J. KosloverA. J. CallaghanM. J. MarcaidaE. F. GarmanM. Martick  et al.

Structure. 2008. DOI : 10.1016/j.str.2008.04.017.

Crystal structure of I-DmoI in complex with its target DNA provides new insights into meganuclease engineering

M. J. MarcaidaJ. PrietoP. RedondoA. D. NadraA. Alibés  et al.

Proceedings of the National Academy of Sciences of the United States of America. 2008. DOI : 10.1073/pnas.0804795105.

Modulation of heme redox potential in the cytochrome c6 family

J. A. R. WorrallB. G. Schlarb-RidleyT. RedaM. J. MarcaidaR. J. Moorlen  et al.

Journal of the American Chemical Society. 2007. DOI : 10.1021/ja072346g.

The RNA degradosome: life in the fast lane of adaptive molecular evolution

M. J. MarcaidaM. A. DePristoV. ChandranA. J. CarpousisB. F. Luisi

Trends in biochemical sciences. 2006. DOI : 10.1016/j.tibs.2006.05.005.

Structure of cytochrome c6A, a novel dithio-cytochrome of Arabidopsis thaliana, and its reactivity with plastocyanin: implications for function

M. J. MarcaidaB. G. Schlarb-RidleyJ. A. R. WorrallJ. WastlT. J. Evans  et al.

Journal of molecular biology. 2006. DOI : 10.1016/j.jmb.2006.05.065.

Structure of Escherichia coli RNase E catalytic domain and implications for RNA turnover

A. J. CallaghanM. J. MarcaidaJ. A. SteadK. J. McDowallW. G. Scott  et al.

Nature. 2005. DOI : 10.1038/nature04084.